miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11977 5' -57.4 NC_003278.1 + 30322 0.67 0.394589
Target:  5'- gCUCGGaCAGcgGCa-CCACCAgGCGCa -3'
miRNA:   3'- -GAGUCgGUCaaCGgcGGUGGUgUGCG- -5'
11977 5' -57.4 NC_003278.1 + 31684 0.67 0.394589
Target:  5'- --aAGCCugcGgcGCCGCCGCC-CAgGCc -3'
miRNA:   3'- gagUCGGu--CaaCGGCGGUGGuGUgCG- -5'
11977 5' -57.4 NC_003278.1 + 12575 0.67 0.39366
Target:  5'- -cCGGCCAGgUGCucauggagauugaCGCCACC-CugGUg -3'
miRNA:   3'- gaGUCGGUCaACG-------------GCGGUGGuGugCG- -5'
11977 5' -57.4 NC_003278.1 + 9094 0.67 0.391807
Target:  5'- gUCGGCCAGUUGgggCGCCuuccagaucaugggGuuCCACugGCa -3'
miRNA:   3'- gAGUCGGUCAACg--GCGG--------------U--GGUGugCG- -5'
11977 5' -57.4 NC_003278.1 + 23083 0.67 0.385365
Target:  5'- gUCGGCCugcagguagcGGUgcugGUCGCCAUC-CugGCg -3'
miRNA:   3'- gAGUCGG----------UCAa---CGGCGGUGGuGugCG- -5'
11977 5' -57.4 NC_003278.1 + 11913 0.67 0.385365
Target:  5'- -cCAGCCGGUcagcagGUCGCCGgucaaCACACGg -3'
miRNA:   3'- gaGUCGGUCAa-----CGGCGGUg----GUGUGCg -5'
11977 5' -57.4 NC_003278.1 + 17034 0.67 0.385365
Target:  5'- aUCGGCCuGGUaGCCaCCGCCGaagACGCc -3'
miRNA:   3'- gAGUCGG-UCAaCGGcGGUGGUg--UGCG- -5'
11977 5' -57.4 NC_003278.1 + 17360 0.67 0.385365
Target:  5'- -cCAGCCGGU---CGCUACCGCACu- -3'
miRNA:   3'- gaGUCGGUCAacgGCGGUGGUGUGcg -5'
11977 5' -57.4 NC_003278.1 + 22810 0.67 0.385365
Target:  5'- --aAGCCGG-UGCucgCGCCGgCGCugGCg -3'
miRNA:   3'- gagUCGGUCaACG---GCGGUgGUGugCG- -5'
11977 5' -57.4 NC_003278.1 + 12483 0.67 0.385365
Target:  5'- -cCuGCaGGUcuaUGCCGCCACCGCcauggcccucauGCGCu -3'
miRNA:   3'- gaGuCGgUCA---ACGGCGGUGGUG------------UGCG- -5'
11977 5' -57.4 NC_003278.1 + 23169 0.67 0.385365
Target:  5'- ---cGCCAGagcgcccUGCgCGCCGCC-CGCGCc -3'
miRNA:   3'- gaguCGGUCa------ACG-GCGGUGGuGUGCG- -5'
11977 5' -57.4 NC_003278.1 + 27187 0.67 0.376283
Target:  5'- gCUCagggAGCCGGUgaaggUGgCGCCGCagaGCGCGUu -3'
miRNA:   3'- -GAG----UCGGUCA-----ACgGCGGUGg--UGUGCG- -5'
11977 5' -57.4 NC_003278.1 + 5864 0.68 0.358559
Target:  5'- gUCGGCgCcGUUGCCGaCUACCACcuUGCc -3'
miRNA:   3'- gAGUCG-GuCAACGGC-GGUGGUGu-GCG- -5'
11977 5' -57.4 NC_003278.1 + 2862 0.68 0.357689
Target:  5'- aCUCGGCCuGUucggcgaaguccuUGCCGCggaauugauggCGCUccaGCACGCg -3'
miRNA:   3'- -GAGUCGGuCA-------------ACGGCG-----------GUGG---UGUGCG- -5'
11977 5' -57.4 NC_003278.1 + 32124 0.68 0.349919
Target:  5'- -cCAGCaGGUgccgGCCGCggcuCGCCAgACGCg -3'
miRNA:   3'- gaGUCGgUCAa---CGGCG----GUGGUgUGCG- -5'
11977 5' -57.4 NC_003278.1 + 28659 0.68 0.340587
Target:  5'- uUCGG-CAGcUUGCCGCCACgGgcugucgcgaguuCGCGCa -3'
miRNA:   3'- gAGUCgGUC-AACGGCGGUGgU-------------GUGCG- -5'
11977 5' -57.4 NC_003278.1 + 22643 0.68 0.333087
Target:  5'- -cCAGCCAGaggUGCagcaCGgCGCCGCGCGg -3'
miRNA:   3'- gaGUCGGUCa--ACG----GCgGUGGUGUGCg -5'
11977 5' -57.4 NC_003278.1 + 10630 0.68 0.333087
Target:  5'- gUCGG--GGUUGCgcugUGCCAUCACGCGCu -3'
miRNA:   3'- gAGUCggUCAACG----GCGGUGGUGUGCG- -5'
11977 5' -57.4 NC_003278.1 + 31470 0.68 0.324896
Target:  5'- -cCAGCCGcUUGCUgGCCAUCGCugGg -3'
miRNA:   3'- gaGUCGGUcAACGG-CGGUGGUGugCg -5'
11977 5' -57.4 NC_003278.1 + 14821 0.68 0.322468
Target:  5'- -gUAGCCgcccagcguggucgGGUUGCUGCCggcggugacgauGCCAUugGCg -3'
miRNA:   3'- gaGUCGG--------------UCAACGGCGG------------UGGUGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.