miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11977 5' -57.4 NC_003278.1 + 17211 0.67 0.421165
Target:  5'- --aAGCCGGgcgaggaugaaGCCGCgACCAauaGCGCg -3'
miRNA:   3'- gagUCGGUCaa---------CGGCGgUGGUg--UGCG- -5'
11977 5' -57.4 NC_003278.1 + 2862 0.68 0.357689
Target:  5'- aCUCGGCCuGUucggcgaaguccuUGCCGCggaauugauggCGCUccaGCACGCg -3'
miRNA:   3'- -GAGUCGGuCA-------------ACGGCG-----------GUGG---UGUGCG- -5'
11977 5' -57.4 NC_003278.1 + 17360 0.67 0.385365
Target:  5'- -cCAGCCGGU---CGCUACCGCACu- -3'
miRNA:   3'- gaGUCGGUCAacgGCGGUGGUGUGcg -5'
11977 5' -57.4 NC_003278.1 + 22810 0.67 0.385365
Target:  5'- --aAGCCGG-UGCucgCGCCGgCGCugGCg -3'
miRNA:   3'- gagUCGGUCaACG---GCGGUgGUGugCG- -5'
11977 5' -57.4 NC_003278.1 + 23169 0.67 0.385365
Target:  5'- ---cGCCAGagcgcccUGCgCGCCGCC-CGCGCc -3'
miRNA:   3'- gaguCGGUCa------ACG-GCGGUGGuGUGCG- -5'
11977 5' -57.4 NC_003278.1 + 12483 0.67 0.385365
Target:  5'- -cCuGCaGGUcuaUGCCGCCACCGCcauggcccucauGCGCu -3'
miRNA:   3'- gaGuCGgUCA---ACGGCGGUGGUG------------UGCG- -5'
11977 5' -57.4 NC_003278.1 + 17034 0.67 0.385365
Target:  5'- aUCGGCCuGGUaGCCaCCGCCGaagACGCc -3'
miRNA:   3'- gAGUCGG-UCAaCGGcGGUGGUg--UGCG- -5'
11977 5' -57.4 NC_003278.1 + 9094 0.67 0.391807
Target:  5'- gUCGGCCAGUUGgggCGCCuuccagaucaugggGuuCCACugGCa -3'
miRNA:   3'- gAGUCGGUCAACg--GCGG--------------U--GGUGugCG- -5'
11977 5' -57.4 NC_003278.1 + 12575 0.67 0.39366
Target:  5'- -cCGGCCAGgUGCucauggagauugaCGCCACC-CugGUg -3'
miRNA:   3'- gaGUCGGUCaACG-------------GCGGUGGuGugCG- -5'
11977 5' -57.4 NC_003278.1 + 12434 0.69 0.312104
Target:  5'- -gCAGCCAGUUGCCGgagcugaucgaugcuCCguucaacgacACCACcCGCc -3'
miRNA:   3'- gaGUCGGUCAACGGC---------------GG----------UGGUGuGCG- -5'
11977 5' -57.4 NC_003278.1 + 10101 0.7 0.271773
Target:  5'- -aCAGCguGUuucUGCCGCUGCUcgGCugGCu -3'
miRNA:   3'- gaGUCGguCA---ACGGCGGUGG--UGugCG- -5'
11977 5' -57.4 NC_003278.1 + 32274 0.71 0.238263
Target:  5'- cCUCGGCCGcaUGCCGCUGCC-CG-GCg -3'
miRNA:   3'- -GAGUCGGUcaACGGCGGUGGuGUgCG- -5'
11977 5' -57.4 NC_003278.1 + 19592 0.76 0.102989
Target:  5'- cCUCGGCCAGcaugaGCgCGaCCugCGCGCGCa -3'
miRNA:   3'- -GAGUCGGUCaa---CG-GC-GGugGUGUGCG- -5'
11977 5' -57.4 NC_003278.1 + 19428 0.75 0.122071
Target:  5'- gCUCAGCagaugGCCGCCGCCggcaaccccacccGCGCGCu -3'
miRNA:   3'- -GAGUCGgucaaCGGCGGUGG-------------UGUGCG- -5'
11977 5' -57.4 NC_003278.1 + 8665 0.74 0.129623
Target:  5'- -aCGGCCAcuucGgcGCCGCCACCGaggACGCg -3'
miRNA:   3'- gaGUCGGU----CaaCGGCGGUGGUg--UGCG- -5'
11977 5' -57.4 NC_003278.1 + 10499 0.73 0.153635
Target:  5'- cCUCgAGCCAGgcccucgUGCUGCCcUCGCGCGUu -3'
miRNA:   3'- -GAG-UCGGUCa------ACGGCGGuGGUGUGCG- -5'
11977 5' -57.4 NC_003278.1 + 22953 0.73 0.153635
Target:  5'- -gCGGCCGGUggcggcaagacUGCCaGCgGCCugGCGCu -3'
miRNA:   3'- gaGUCGGUCA-----------ACGG-CGgUGGugUGCG- -5'
11977 5' -57.4 NC_003278.1 + 27789 0.73 0.162497
Target:  5'- gUCAGCCAGUacgaaGCCGCCAUgGC-CGa -3'
miRNA:   3'- gAGUCGGUCAa----CGGCGGUGgUGuGCg -5'
11977 5' -57.4 NC_003278.1 + 16572 0.71 0.214004
Target:  5'- -aCAGCCGGUcGCCacGCCACCAcCACc- -3'
miRNA:   3'- gaGUCGGUCAaCGG--CGGUGGU-GUGcg -5'
11977 5' -57.4 NC_003278.1 + 26827 0.71 0.219863
Target:  5'- ---cGCCAGgggcGUCGCCACCGCcaucagGCGCg -3'
miRNA:   3'- gaguCGGUCaa--CGGCGGUGGUG------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.