miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11978 5' -58.7 NC_003278.1 + 19499 0.66 0.404996
Target:  5'- ---cGCGGGUGG-GGUUGCCGgCgGCg -3'
miRNA:   3'- uaguCGUCCGCCuUUAGCGGCgGgCG- -5'
11978 5' -58.7 NC_003278.1 + 30121 0.66 0.404996
Target:  5'- -cCAGguGGuuGAGGUUGUCGgCUGCg -3'
miRNA:   3'- uaGUCguCCgcCUUUAGCGGCgGGCG- -5'
11978 5' -58.7 NC_003278.1 + 18778 0.66 0.404996
Target:  5'- cGUCGGUauccaAGGgGGAGAgaaacCGCCGgCCGg -3'
miRNA:   3'- -UAGUCG-----UCCgCCUUUa----GCGGCgGGCg -5'
11978 5' -58.7 NC_003278.1 + 19330 0.66 0.404996
Target:  5'- cUCAGCAGaGCGacguGcgCGCCuUCCGCa -3'
miRNA:   3'- uAGUCGUC-CGCcu--UuaGCGGcGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 13211 0.66 0.402179
Target:  5'- -aCGGCAGGCGaugggcugacggccGAGgcAUCGCCGa-CGCg -3'
miRNA:   3'- uaGUCGUCCGC--------------CUU--UAGCGGCggGCG- -5'
11978 5' -58.7 NC_003278.1 + 9574 0.66 0.395654
Target:  5'- -cCGGCcuGGCGGGAAagcugggCGUCGCUgGCu -3'
miRNA:   3'- uaGUCGu-CCGCCUUUa------GCGGCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 3132 0.66 0.395654
Target:  5'- cAUCAGCAGGUucuGGAAAgccucggCGUCGUacucgagaCGCa -3'
miRNA:   3'- -UAGUCGUCCG---CCUUUa------GCGGCGg-------GCG- -5'
11978 5' -58.7 NC_003278.1 + 20769 0.66 0.386451
Target:  5'- -gCAGCAGGUGacuGAGGUCGgCggcgaGCUCGCg -3'
miRNA:   3'- uaGUCGUCCGC---CUUUAGCgG-----CGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 26668 0.66 0.377391
Target:  5'- --aGGCGGGCGGcgg-CGCauucgCGUCCGCc -3'
miRNA:   3'- uagUCGUCCGCCuuuaGCG-----GCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 14813 0.66 0.377391
Target:  5'- -cCAGCGuGGuCGGG--UUGCUGCCgGCg -3'
miRNA:   3'- uaGUCGU-CC-GCCUuuAGCGGCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 14292 0.66 0.368475
Target:  5'- gGUCAGCcgucucgccGGGCG-----CGCCGCCgGCg -3'
miRNA:   3'- -UAGUCG---------UCCGCcuuuaGCGGCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 19966 0.66 0.368475
Target:  5'- -gCGGCAGgguGCGGGccuGUUGCCGCagCGCc -3'
miRNA:   3'- uaGUCGUC---CGCCUu--UAGCGGCGg-GCG- -5'
11978 5' -58.7 NC_003278.1 + 32124 0.66 0.359704
Target:  5'- -cCAGCAGGUGccGGcCGCgGCUCGCc -3'
miRNA:   3'- uaGUCGUCCGCcuUUaGCGgCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 23161 0.66 0.358836
Target:  5'- -aCAGCgaccgccAGaGCGcccuGcgCGCCGCCCGCg -3'
miRNA:   3'- uaGUCG-------UC-CGCcu--UuaGCGGCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 8602 0.67 0.351081
Target:  5'- cUCAGCAgGGCGGcGA-CGuuG-CCGCg -3'
miRNA:   3'- uAGUCGU-CCGCCuUUaGCggCgGGCG- -5'
11978 5' -58.7 NC_003278.1 + 11907 0.67 0.345977
Target:  5'- gGUCAGCAGGUcgccggucaacacacGGAcg-CGCUGCgCgGCa -3'
miRNA:   3'- -UAGUCGUCCG---------------CCUuuaGCGGCG-GgCG- -5'
11978 5' -58.7 NC_003278.1 + 1 0.67 0.310192
Target:  5'- --aGGCGuGGCGGggGgacgacugCGCgCGCCgGCg -3'
miRNA:   3'- uagUCGU-CCGCCuuUa-------GCG-GCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 8830 0.67 0.310192
Target:  5'- -gCAGCAGGUGcGAGcagucagCGCCGCCgaggGCg -3'
miRNA:   3'- uaGUCGUCCGC-CUUua-----GCGGCGGg---CG- -5'
11978 5' -58.7 NC_003278.1 + 29068 0.68 0.294882
Target:  5'- -cCGGCGGcgucGUGGAAAUCGCCaaCUGCu -3'
miRNA:   3'- uaGUCGUC----CGCCUUUAGCGGcgGGCG- -5'
11978 5' -58.7 NC_003278.1 + 29281 0.68 0.27303
Target:  5'- --gAGCAGGCGcuucuuGAAcUCGCUGgCCGCc -3'
miRNA:   3'- uagUCGUCCGC------CUUuAGCGGCgGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.