Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11978 | 5' | -58.7 | NC_003278.1 | + | 11907 | 0.67 | 0.345977 |
Target: 5'- gGUCAGCAGGUcgccggucaacacacGGAcg-CGCUGCgCgGCa -3' miRNA: 3'- -UAGUCGUCCG---------------CCUuuaGCGGCG-GgCG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 8830 | 0.67 | 0.310192 |
Target: 5'- -gCAGCAGGUGcGAGcagucagCGCCGCCgaggGCg -3' miRNA: 3'- uaGUCGUCCGC-CUUua-----GCGGCGGg---CG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 1 | 0.67 | 0.310192 |
Target: 5'- --aGGCGuGGCGGggGgacgacugCGCgCGCCgGCg -3' miRNA: 3'- uagUCGU-CCGCCuuUa-------GCG-GCGGgCG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 32124 | 0.66 | 0.359704 |
Target: 5'- -cCAGCAGGUGccGGcCGCgGCUCGCc -3' miRNA: 3'- uaGUCGUCCGCcuUUaGCGgCGGGCG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 19966 | 0.66 | 0.368475 |
Target: 5'- -gCGGCAGgguGCGGGccuGUUGCCGCagCGCc -3' miRNA: 3'- uaGUCGUC---CGCCUu--UAGCGGCGg-GCG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 23161 | 0.66 | 0.358836 |
Target: 5'- -aCAGCgaccgccAGaGCGcccuGcgCGCCGCCCGCg -3' miRNA: 3'- uaGUCG-------UC-CGCcu--UuaGCGGCGGGCG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 3132 | 0.66 | 0.395654 |
Target: 5'- cAUCAGCAGGUucuGGAAAgccucggCGUCGUacucgagaCGCa -3' miRNA: 3'- -UAGUCGUCCG---CCUUUa------GCGGCGg-------GCG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 19330 | 0.66 | 0.404996 |
Target: 5'- cUCAGCAGaGCGacguGcgCGCCuUCCGCa -3' miRNA: 3'- uAGUCGUC-CGCcu--UuaGCGGcGGGCG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 18778 | 0.66 | 0.404996 |
Target: 5'- cGUCGGUauccaAGGgGGAGAgaaacCGCCGgCCGg -3' miRNA: 3'- -UAGUCG-----UCCgCCUUUa----GCGGCgGGCg -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 19499 | 0.66 | 0.404996 |
Target: 5'- ---cGCGGGUGG-GGUUGCCGgCgGCg -3' miRNA: 3'- uaguCGUCCGCCuUUAGCGGCgGgCG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 30121 | 0.66 | 0.404996 |
Target: 5'- -cCAGguGGuuGAGGUUGUCGgCUGCg -3' miRNA: 3'- uaGUCguCCgcCUUUAGCGGCgGGCG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 13211 | 0.66 | 0.402179 |
Target: 5'- -aCGGCAGGCGaugggcugacggccGAGgcAUCGCCGa-CGCg -3' miRNA: 3'- uaGUCGUCCGC--------------CUU--UAGCGGCggGCG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 20769 | 0.66 | 0.386451 |
Target: 5'- -gCAGCAGGUGacuGAGGUCGgCggcgaGCUCGCg -3' miRNA: 3'- uaGUCGUCCGC---CUUUAGCgG-----CGGGCG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 14813 | 0.66 | 0.377391 |
Target: 5'- -cCAGCGuGGuCGGG--UUGCUGCCgGCg -3' miRNA: 3'- uaGUCGU-CC-GCCUuuAGCGGCGGgCG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 26668 | 0.66 | 0.377391 |
Target: 5'- --aGGCGGGCGGcgg-CGCauucgCGUCCGCc -3' miRNA: 3'- uagUCGUCCGCCuuuaGCG-----GCGGGCG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 14292 | 0.66 | 0.368475 |
Target: 5'- gGUCAGCcgucucgccGGGCG-----CGCCGCCgGCg -3' miRNA: 3'- -UAGUCG---------UCCGCcuuuaGCGGCGGgCG- -5' |
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11978 | 5' | -58.7 | NC_003278.1 | + | 9574 | 0.66 | 0.395654 |
Target: 5'- -cCGGCcuGGCGGGAAagcugggCGUCGCUgGCu -3' miRNA: 3'- uaGUCGu-CCGCCUUUa------GCGGCGGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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