miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11978 5' -58.7 NC_003278.1 + 12789 1.08 0.000248
Target:  5'- gAUCAGCAGGCGGAAAUCGCCGCCCGCc -3'
miRNA:   3'- -UAGUCGUCCGCCUUUAGCGGCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 17120 0.81 0.0338
Target:  5'- cAUCGGCaAGGCGGGcaccagcGGUaCGCUGCCCGCa -3'
miRNA:   3'- -UAGUCG-UCCGCCU-------UUA-GCGGCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 2907 0.79 0.04996
Target:  5'- -cCAGCAcGCGGAAcUUGCCGCCCGg -3'
miRNA:   3'- uaGUCGUcCGCCUUuAGCGGCGGGCg -5'
11978 5' -58.7 NC_003278.1 + 26590 0.76 0.07333
Target:  5'- cAUCGGCGccuacccuGGCGGAcgcgAAUgcgcCGCCGCCCGCc -3'
miRNA:   3'- -UAGUCGU--------CCGCCU----UUA----GCGGCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 12851 0.75 0.089956
Target:  5'- --aGGCGGGCGGcGAUUuCCGCCUGCu -3'
miRNA:   3'- uagUCGUCCGCCuUUAGcGGCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 33255 0.74 0.103963
Target:  5'- -gCAGCcGGCGGAAccgcAUUGCCGaUCCGCu -3'
miRNA:   3'- uaGUCGuCCGCCUU----UAGCGGC-GGGCG- -5'
11978 5' -58.7 NC_003278.1 + 13496 0.73 0.123477
Target:  5'- cUCAGCAacuGGuCGGAcAUCGCCGCCacaccaGCc -3'
miRNA:   3'- uAGUCGU---CC-GCCUuUAGCGGCGGg-----CG- -5'
11978 5' -58.7 NC_003278.1 + 20116 0.73 0.130705
Target:  5'- uGUCAGCAGugucGCcGAGGUCcauGUCGCCCGCg -3'
miRNA:   3'- -UAGUCGUC----CGcCUUUAG---CGGCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 31829 0.73 0.136766
Target:  5'- gGUUGGCGGGaggcaaccccggaGGAAAUcCGCCGCgCCGCc -3'
miRNA:   3'- -UAGUCGUCCg------------CCUUUA-GCGGCG-GGCG- -5'
11978 5' -58.7 NC_003278.1 + 21855 0.72 0.146344
Target:  5'- uUCAgGUcuGCGGu-GUCGCUGCCCGCg -3'
miRNA:   3'- uAGU-CGucCGCCuuUAGCGGCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 21929 0.71 0.172533
Target:  5'- gGUCcuGCAGGCGGGcgcgcagGcgCGCCGCCUuguuGCg -3'
miRNA:   3'- -UAGu-CGUCCGCCU-------UuaGCGGCGGG----CG- -5'
11978 5' -58.7 NC_003278.1 + 31903 0.71 0.182823
Target:  5'- -gCGGCGcGGCGGAuuuccuccggGGUUGCCuCCCGCc -3'
miRNA:   3'- uaGUCGU-CCGCCU----------UUAGCGGcGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 4983 0.71 0.182823
Target:  5'- gGUCGGCGGGCcgucGAagcGAUCGCCGagcacagCCGCg -3'
miRNA:   3'- -UAGUCGUCCGc---CU---UUAGCGGCg------GGCG- -5'
11978 5' -58.7 NC_003278.1 + 12394 0.7 0.203929
Target:  5'- --aAGCGGGC-GAGggCGCCGCCgGUa -3'
miRNA:   3'- uagUCGUCCGcCUUuaGCGGCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 23506 0.7 0.227116
Target:  5'- -gUAGUAGGCGauGAugccgguguAGUCGCCGCCgGUg -3'
miRNA:   3'- uaGUCGUCCGC--CU---------UUAGCGGCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 19429 0.69 0.245941
Target:  5'- cUCAGCAGaUGGc---CGCCGCCgGCa -3'
miRNA:   3'- uAGUCGUCcGCCuuuaGCGGCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 7054 0.68 0.266041
Target:  5'- -gCAGCAGcaugaGCGGAuucAUCGCCaacgGCCCGg -3'
miRNA:   3'- uaGUCGUC-----CGCCUu--UAGCGG----CGGGCg -5'
11978 5' -58.7 NC_003278.1 + 29281 0.68 0.27303
Target:  5'- --gAGCAGGCGcuucuuGAAcUCGCUGgCCGCc -3'
miRNA:   3'- uagUCGUCCGC------CUUuAGCGGCgGGCG- -5'
11978 5' -58.7 NC_003278.1 + 29068 0.68 0.294882
Target:  5'- -cCGGCGGcgucGUGGAAAUCGCCaaCUGCu -3'
miRNA:   3'- uaGUCGUC----CGCCUUUAGCGGcgGGCG- -5'
11978 5' -58.7 NC_003278.1 + 8830 0.67 0.310192
Target:  5'- -gCAGCAGGUGcGAGcagucagCGCCGCCgaggGCg -3'
miRNA:   3'- uaGUCGUCCGC-CUUua-----GCGGCGGg---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.