miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11978 5' -58.7 NC_003278.1 + 1 0.67 0.310192
Target:  5'- --aGGCGuGGCGGggGgacgacugCGCgCGCCgGCg -3'
miRNA:   3'- uagUCGU-CCGCCuuUa-------GCG-GCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 2907 0.79 0.04996
Target:  5'- -cCAGCAcGCGGAAcUUGCCGCCCGg -3'
miRNA:   3'- uaGUCGUcCGCCUUuAGCGGCGGGCg -5'
11978 5' -58.7 NC_003278.1 + 3132 0.66 0.395654
Target:  5'- cAUCAGCAGGUucuGGAAAgccucggCGUCGUacucgagaCGCa -3'
miRNA:   3'- -UAGUCGUCCG---CCUUUa------GCGGCGg-------GCG- -5'
11978 5' -58.7 NC_003278.1 + 4983 0.71 0.182823
Target:  5'- gGUCGGCGGGCcgucGAagcGAUCGCCGagcacagCCGCg -3'
miRNA:   3'- -UAGUCGUCCGc---CU---UUAGCGGCg------GGCG- -5'
11978 5' -58.7 NC_003278.1 + 7054 0.68 0.266041
Target:  5'- -gCAGCAGcaugaGCGGAuucAUCGCCaacgGCCCGg -3'
miRNA:   3'- uaGUCGUC-----CGCCUu--UAGCGG----CGGGCg -5'
11978 5' -58.7 NC_003278.1 + 8602 0.67 0.351081
Target:  5'- cUCAGCAgGGCGGcGA-CGuuG-CCGCg -3'
miRNA:   3'- uAGUCGU-CCGCCuUUaGCggCgGGCG- -5'
11978 5' -58.7 NC_003278.1 + 8830 0.67 0.310192
Target:  5'- -gCAGCAGGUGcGAGcagucagCGCCGCCgaggGCg -3'
miRNA:   3'- uaGUCGUCCGC-CUUua-----GCGGCGGg---CG- -5'
11978 5' -58.7 NC_003278.1 + 9574 0.66 0.395654
Target:  5'- -cCGGCcuGGCGGGAAagcugggCGUCGCUgGCu -3'
miRNA:   3'- uaGUCGu-CCGCCUUUa------GCGGCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 11907 0.67 0.345977
Target:  5'- gGUCAGCAGGUcgccggucaacacacGGAcg-CGCUGCgCgGCa -3'
miRNA:   3'- -UAGUCGUCCG---------------CCUuuaGCGGCG-GgCG- -5'
11978 5' -58.7 NC_003278.1 + 12394 0.7 0.203929
Target:  5'- --aAGCGGGC-GAGggCGCCGCCgGUa -3'
miRNA:   3'- uagUCGUCCGcCUUuaGCGGCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 12789 1.08 0.000248
Target:  5'- gAUCAGCAGGCGGAAAUCGCCGCCCGCc -3'
miRNA:   3'- -UAGUCGUCCGCCUUUAGCGGCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 12851 0.75 0.089956
Target:  5'- --aGGCGGGCGGcGAUUuCCGCCUGCu -3'
miRNA:   3'- uagUCGUCCGCCuUUAGcGGCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 13211 0.66 0.402179
Target:  5'- -aCGGCAGGCGaugggcugacggccGAGgcAUCGCCGa-CGCg -3'
miRNA:   3'- uaGUCGUCCGC--------------CUU--UAGCGGCggGCG- -5'
11978 5' -58.7 NC_003278.1 + 13496 0.73 0.123477
Target:  5'- cUCAGCAacuGGuCGGAcAUCGCCGCCacaccaGCc -3'
miRNA:   3'- uAGUCGU---CC-GCCUuUAGCGGCGGg-----CG- -5'
11978 5' -58.7 NC_003278.1 + 14292 0.66 0.368475
Target:  5'- gGUCAGCcgucucgccGGGCG-----CGCCGCCgGCg -3'
miRNA:   3'- -UAGUCG---------UCCGCcuuuaGCGGCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 14813 0.66 0.377391
Target:  5'- -cCAGCGuGGuCGGG--UUGCUGCCgGCg -3'
miRNA:   3'- uaGUCGU-CC-GCCUuuAGCGGCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 17120 0.81 0.0338
Target:  5'- cAUCGGCaAGGCGGGcaccagcGGUaCGCUGCCCGCa -3'
miRNA:   3'- -UAGUCG-UCCGCCU-------UUA-GCGGCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 18778 0.66 0.404996
Target:  5'- cGUCGGUauccaAGGgGGAGAgaaacCGCCGgCCGg -3'
miRNA:   3'- -UAGUCG-----UCCgCCUUUa----GCGGCgGGCg -5'
11978 5' -58.7 NC_003278.1 + 19330 0.66 0.404996
Target:  5'- cUCAGCAGaGCGacguGcgCGCCuUCCGCa -3'
miRNA:   3'- uAGUCGUC-CGCcu--UuaGCGGcGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 19429 0.69 0.245941
Target:  5'- cUCAGCAGaUGGc---CGCCGCCgGCa -3'
miRNA:   3'- uAGUCGUCcGCCuuuaGCGGCGGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.