miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11978 5' -58.7 NC_003278.1 + 12789 1.08 0.000248
Target:  5'- gAUCAGCAGGCGGAAAUCGCCGCCCGCc -3'
miRNA:   3'- -UAGUCGUCCGCCUUUAGCGGCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 19330 0.66 0.404996
Target:  5'- cUCAGCAGaGCGacguGcgCGCCuUCCGCa -3'
miRNA:   3'- uAGUCGUC-CGCcu--UuaGCGGcGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 3132 0.66 0.395654
Target:  5'- cAUCAGCAGGUucuGGAAAgccucggCGUCGUacucgagaCGCa -3'
miRNA:   3'- -UAGUCGUCCG---CCUUUa------GCGGCGg-------GCG- -5'
11978 5' -58.7 NC_003278.1 + 23161 0.66 0.358836
Target:  5'- -aCAGCgaccgccAGaGCGcccuGcgCGCCGCCCGCg -3'
miRNA:   3'- uaGUCG-------UC-CGCcu--UuaGCGGCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 1 0.67 0.310192
Target:  5'- --aGGCGuGGCGGggGgacgacugCGCgCGCCgGCg -3'
miRNA:   3'- uagUCGU-CCGCCuuUa-------GCG-GCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 29068 0.68 0.294882
Target:  5'- -cCGGCGGcgucGUGGAAAUCGCCaaCUGCu -3'
miRNA:   3'- uaGUCGUC----CGCCUUUAGCGGcgGGCG- -5'
11978 5' -58.7 NC_003278.1 + 7054 0.68 0.266041
Target:  5'- -gCAGCAGcaugaGCGGAuucAUCGCCaacgGCCCGg -3'
miRNA:   3'- uaGUCGUC-----CGCCUu--UAGCGG----CGGGCg -5'
11978 5' -58.7 NC_003278.1 + 19429 0.69 0.245941
Target:  5'- cUCAGCAGaUGGc---CGCCGCCgGCa -3'
miRNA:   3'- uAGUCGUCcGCCuuuaGCGGCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 4983 0.71 0.182823
Target:  5'- gGUCGGCGGGCcgucGAagcGAUCGCCGagcacagCCGCg -3'
miRNA:   3'- -UAGUCGUCCGc---CU---UUAGCGGCg------GGCG- -5'
11978 5' -58.7 NC_003278.1 + 31829 0.73 0.136766
Target:  5'- gGUUGGCGGGaggcaaccccggaGGAAAUcCGCCGCgCCGCc -3'
miRNA:   3'- -UAGUCGUCCg------------CCUUUA-GCGGCG-GGCG- -5'
11978 5' -58.7 NC_003278.1 + 13496 0.73 0.123477
Target:  5'- cUCAGCAacuGGuCGGAcAUCGCCGCCacaccaGCc -3'
miRNA:   3'- uAGUCGU---CC-GCCUuUAGCGGCGGg-----CG- -5'
11978 5' -58.7 NC_003278.1 + 26590 0.76 0.07333
Target:  5'- cAUCGGCGccuacccuGGCGGAcgcgAAUgcgcCGCCGCCCGCc -3'
miRNA:   3'- -UAGUCGU--------CCGCCU----UUA----GCGGCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 2907 0.79 0.04996
Target:  5'- -cCAGCAcGCGGAAcUUGCCGCCCGg -3'
miRNA:   3'- uaGUCGUcCGCCUUuAGCGGCGGGCg -5'
11978 5' -58.7 NC_003278.1 + 17120 0.81 0.0338
Target:  5'- cAUCGGCaAGGCGGGcaccagcGGUaCGCUGCCCGCa -3'
miRNA:   3'- -UAGUCG-UCCGCCU-------UUA-GCGGCGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 20769 0.66 0.386451
Target:  5'- -gCAGCAGGUGacuGAGGUCGgCggcgaGCUCGCg -3'
miRNA:   3'- uaGUCGUCCGC---CUUUAGCgG-----CGGGCG- -5'
11978 5' -58.7 NC_003278.1 + 9574 0.66 0.395654
Target:  5'- -cCGGCcuGGCGGGAAagcugggCGUCGCUgGCu -3'
miRNA:   3'- uaGUCGu-CCGCCUUUa------GCGGCGGgCG- -5'
11978 5' -58.7 NC_003278.1 + 13211 0.66 0.402179
Target:  5'- -aCGGCAGGCGaugggcugacggccGAGgcAUCGCCGa-CGCg -3'
miRNA:   3'- uaGUCGUCCGC--------------CUU--UAGCGGCggGCG- -5'
11978 5' -58.7 NC_003278.1 + 30121 0.66 0.404996
Target:  5'- -cCAGguGGuuGAGGUUGUCGgCUGCg -3'
miRNA:   3'- uaGUCguCCgcCUUUAGCGGCgGGCG- -5'
11978 5' -58.7 NC_003278.1 + 19499 0.66 0.404996
Target:  5'- ---cGCGGGUGG-GGUUGCCGgCgGCg -3'
miRNA:   3'- uaguCGUCCGCCuUUAGCGGCgGgCG- -5'
11978 5' -58.7 NC_003278.1 + 12851 0.75 0.089956
Target:  5'- --aGGCGGGCGGcGAUUuCCGCCUGCu -3'
miRNA:   3'- uagUCGUCCGCCuUUAGcGGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.