miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11979 3' -61.8 NC_003278.1 + 28436 0.66 0.304837
Target:  5'- gCGGCGUCUGGuGGUGCccACCcagcgUCGACCu -3'
miRNA:   3'- -GUCGCGGGUC-CCGCGacUGG-----AGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 19153 0.66 0.304837
Target:  5'- cCGGCGCCCAGuGaaaCGUcacGGCCaggUCGGCCa -3'
miRNA:   3'- -GUCGCGGGUC-Cc--GCGa--CUGG---AGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 17809 0.66 0.296699
Target:  5'- gCAcCGCCCA-GGUGCUGGCCgacacuaUCG-CCg -3'
miRNA:   3'- -GUcGCGGGUcCCGCGACUGG-------AGCuGG- -5'
11979 3' -61.8 NC_003278.1 + 20056 0.66 0.283042
Target:  5'- uGGCGCCgAGGaucugcuucGCGUUGuaGCCggugCGGCCc -3'
miRNA:   3'- gUCGCGGgUCC---------CGCGAC--UGGa---GCUGG- -5'
11979 3' -61.8 NC_003278.1 + 19438 0.66 0.283042
Target:  5'- -cGCGgCCAGcgcGGUGCUGACCUgcuCCa -3'
miRNA:   3'- guCGCgGGUC---CCGCGACUGGAgcuGG- -5'
11979 3' -61.8 NC_003278.1 + 23119 0.66 0.277443
Target:  5'- cCGGCGCCaAGGGUGacaaccugaagGACCUgcgccacaccuacagCGACCg -3'
miRNA:   3'- -GUCGCGGgUCCCGCga---------CUGGA---------------GCUGG- -5'
11979 3' -61.8 NC_003278.1 + 9665 0.66 0.275366
Target:  5'- cCAGCGCCUGGcGCaGCUGcuGCCgcuguuggucaggUCGGCCu -3'
miRNA:   3'- -GUCGCGGGUCcCG-CGAC--UGG-------------AGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 9574 0.66 0.269209
Target:  5'- gAGCGCCa--GGCccagGCcGACCUgGACCa -3'
miRNA:   3'- gUCGCGGgucCCG----CGaCUGGAgCUGG- -5'
11979 3' -61.8 NC_003278.1 + 11837 0.66 0.269209
Target:  5'- gCAGCGCgUccGuGUGUUGACCggCGACCu -3'
miRNA:   3'- -GUCGCGgGucC-CGCGACUGGa-GCUGG- -5'
11979 3' -61.8 NC_003278.1 + 21656 0.66 0.2625
Target:  5'- cCGGCGCCaucGGUGCccugGugCUCGGCg -3'
miRNA:   3'- -GUCGCGGgucCCGCGa---CugGAGCUGg -5'
11979 3' -61.8 NC_003278.1 + 21530 0.66 0.2625
Target:  5'- uCAGCGCgggccgUCAGGcuguCGCcGGCCUCGACg -3'
miRNA:   3'- -GUCGCG------GGUCCc---GCGaCUGGAGCUGg -5'
11979 3' -61.8 NC_003278.1 + 20739 0.67 0.255926
Target:  5'- -cGCGCagCCAGGG-GCUGuucuugucgaacAgCUCGACCg -3'
miRNA:   3'- guCGCG--GGUCCCgCGAC------------UgGAGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 31752 0.67 0.255926
Target:  5'- cCGGUGUCCcGGGCacccuGCUgGACCUguucacccgCGACCa -3'
miRNA:   3'- -GUCGCGGGuCCCG-----CGA-CUGGA---------GCUGG- -5'
11979 3' -61.8 NC_003278.1 + 34391 0.67 0.255277
Target:  5'- gCAGCG-CCGGGGCcaguaGCUGgACCuuccucgUCGAUCg -3'
miRNA:   3'- -GUCGCgGGUCCCG-----CGAC-UGG-------AGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 9612 0.67 0.249489
Target:  5'- gCAGCuGCgCCA-GGCGCUGGCCauccgcgaacgcUUGAUCg -3'
miRNA:   3'- -GUCG-CG-GGUcCCGCGACUGG------------AGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 26592 0.67 0.246951
Target:  5'- uCGGCGCCUAcccuGGcggacgcgaauGCGCcgccgcccgccugGGCCUCGACCu -3'
miRNA:   3'- -GUCGCGGGU----CC-----------CGCGa------------CUGGAGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 20040 0.67 0.237015
Target:  5'- uGGCaGCCgC-GGGCGacaugGACCUCGGCg -3'
miRNA:   3'- gUCG-CGG-GuCCCGCga---CUGGAGCUGg -5'
11979 3' -61.8 NC_003278.1 + 23226 0.67 0.237015
Target:  5'- gCGGCGCgCAGGGCGCUcuGGCggUCG-CUg -3'
miRNA:   3'- -GUCGCGgGUCCCGCGA--CUGg-AGCuGG- -5'
11979 3' -61.8 NC_003278.1 + 5900 0.67 0.237015
Target:  5'- -cGUGaCCCGGgccuGGUGgUGAuCCUCGGCCg -3'
miRNA:   3'- guCGC-GGGUC----CCGCgACU-GGAGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 6615 0.67 0.230977
Target:  5'- uCGGCgauGUCCAGGGCGCcGGCguaaUCG-CCg -3'
miRNA:   3'- -GUCG---CGGGUCCCGCGaCUGg---AGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.