miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11979 3' -61.8 NC_003278.1 + 19153 0.66 0.304837
Target:  5'- cCGGCGCCCAGuGaaaCGUcacGGCCaggUCGGCCa -3'
miRNA:   3'- -GUCGCGGGUC-Cc--GCGa--CUGG---AGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 19366 0.68 0.21758
Target:  5'- gCGGCGCCCuGGagcaggucagcaccGCGCUGGCCgcgcaacaGGCa -3'
miRNA:   3'- -GUCGCGGGuCC--------------CGCGACUGGag------CUGg -5'
11979 3' -61.8 NC_003278.1 + 19438 0.66 0.283042
Target:  5'- -cGCGgCCAGcgcGGUGCUGACCUgcuCCa -3'
miRNA:   3'- guCGCgGGUC---CCGCGACUGGAgcuGG- -5'
11979 3' -61.8 NC_003278.1 + 19957 0.71 0.135296
Target:  5'- aAGUGCCCAGGGC-CaGuacuuCCUgGGCCg -3'
miRNA:   3'- gUCGCGGGUCCCGcGaCu----GGAgCUGG- -5'
11979 3' -61.8 NC_003278.1 + 20040 0.67 0.237015
Target:  5'- uGGCaGCCgC-GGGCGacaugGACCUCGGCg -3'
miRNA:   3'- gUCG-CGG-GuCCCGCga---CUGGAGCUGg -5'
11979 3' -61.8 NC_003278.1 + 20056 0.66 0.283042
Target:  5'- uGGCGCCgAGGaucugcuucGCGUUGuaGCCggugCGGCCc -3'
miRNA:   3'- gUCGCGGgUCC---------CGCGAC--UGGa---GCUGG- -5'
11979 3' -61.8 NC_003278.1 + 20284 0.73 0.084172
Target:  5'- uGGCGUCCAGGGCaGCaUGgccggcACCUCGAUg -3'
miRNA:   3'- gUCGCGGGUCCCG-CG-AC------UGGAGCUGg -5'
11979 3' -61.8 NC_003278.1 + 20739 0.67 0.255926
Target:  5'- -cGCGCagCCAGGG-GCUGuucuugucgaacAgCUCGACCg -3'
miRNA:   3'- guCGCG--GGUCCCgCGAC------------UgGAGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 21236 0.7 0.139061
Target:  5'- cCGGCGUCCuGGGCuacCUGGgCaUCGACCu -3'
miRNA:   3'- -GUCGCGGGuCCCGc--GACUgG-AGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 21455 0.68 0.197426
Target:  5'- cCGGCcugGCCCAGGGC-CUcGGCgC-CGGCCa -3'
miRNA:   3'- -GUCG---CGGGUCCCGcGA-CUG-GaGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 21530 0.66 0.2625
Target:  5'- uCAGCGCgggccgUCAGGcuguCGCcGGCCUCGACg -3'
miRNA:   3'- -GUCGCG------GGUCCc---GCGaCUGGAGCUGg -5'
11979 3' -61.8 NC_003278.1 + 21656 0.66 0.2625
Target:  5'- cCGGCGCCaucGGUGCccugGugCUCGGCg -3'
miRNA:   3'- -GUCGCGGgucCCGCGa---CugGAGCUGg -5'
11979 3' -61.8 NC_003278.1 + 21686 0.71 0.120823
Target:  5'- cCAGCGCCCc-GGCGCaGGCCaucaccaUCGACa -3'
miRNA:   3'- -GUCGCGGGucCCGCGaCUGG-------AGCUGg -5'
11979 3' -61.8 NC_003278.1 + 21735 0.71 0.135296
Target:  5'- -uGCG-CCGGGGCGCUGGCgC-CGAgCa -3'
miRNA:   3'- guCGCgGGUCCCGCGACUG-GaGCUgG- -5'
11979 3' -61.8 NC_003278.1 + 23119 0.66 0.277443
Target:  5'- cCGGCGCCaAGGGUGacaaccugaagGACCUgcgccacaccuacagCGACCg -3'
miRNA:   3'- -GUCGCGGgUCCCGCga---------CUGGA---------------GCUGG- -5'
11979 3' -61.8 NC_003278.1 + 23226 0.67 0.237015
Target:  5'- gCGGCGCgCAGGGCGCUcuGGCggUCG-CUg -3'
miRNA:   3'- -GUCGCGgGUCCCGCGA--CUGg-AGCuGG- -5'
11979 3' -61.8 NC_003278.1 + 26592 0.67 0.246951
Target:  5'- uCGGCGCCUAcccuGGcggacgcgaauGCGCcgccgcccgccugGGCCUCGACCu -3'
miRNA:   3'- -GUCGCGGGU----CC-----------CGCGa------------CUGGAGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 27533 0.71 0.127694
Target:  5'- cCAGCGaagaccucguCCCAGGcGCGCUGGgCgaguuguUCGGCCa -3'
miRNA:   3'- -GUCGC----------GGGUCC-CGCGACUgG-------AGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 28436 0.66 0.304837
Target:  5'- gCGGCGUCUGGuGGUGCccACCcagcgUCGACCu -3'
miRNA:   3'- -GUCGCGGGUC-CCGCGacUGG-----AGCUGG- -5'
11979 3' -61.8 NC_003278.1 + 28747 0.76 0.048893
Target:  5'- gCAGacguaGCCCAGGGCGCgcGCCUCGGUCa -3'
miRNA:   3'- -GUCg----CGGGUCCCGCGacUGGAGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.