miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11980 3' -56.5 NC_003278.1 + 4128 0.66 0.541152
Target:  5'- gACCGCgacggauGGGACCGgGccGACAGCg--- -3'
miRNA:   3'- gUGGCG-------CCCUGGCgCa-UUGUCGaugu -5'
11980 3' -56.5 NC_003278.1 + 32598 0.66 0.531319
Target:  5'- gGCgCGCGcGGGCCGCG--ACAGagaaUGCGc -3'
miRNA:   3'- gUG-GCGC-CCUGGCGCauUGUCg---AUGU- -5'
11980 3' -56.5 NC_003278.1 + 22353 0.66 0.509709
Target:  5'- uGCCGCccucGcCCGCGUGACGgGCUACc -3'
miRNA:   3'- gUGGCGcc--CuGGCGCAUUGU-CGAUGu -5'
11980 3' -56.5 NC_003278.1 + 12161 0.66 0.509709
Target:  5'- cCGCCgGCGGGAagaaCUGCGcgcaggugGugGGCUGCGc -3'
miRNA:   3'- -GUGG-CGCCCU----GGCGCa-------UugUCGAUGU- -5'
11980 3' -56.5 NC_003278.1 + 33899 0.67 0.478017
Target:  5'- aGCCGCGGaaGCCGC-UGGCGGCa--- -3'
miRNA:   3'- gUGGCGCCc-UGGCGcAUUGUCGaugu -5'
11980 3' -56.5 NC_003278.1 + 2798 0.67 0.478017
Target:  5'- -cCCGgGGGugCGCaccuuCAGCUACu -3'
miRNA:   3'- guGGCgCCCugGCGcauu-GUCGAUGu -5'
11980 3' -56.5 NC_003278.1 + 19387 0.67 0.447326
Target:  5'- gCACCGCGcuGGCCGCGcAACAGgcACGg -3'
miRNA:   3'- -GUGGCGCc-CUGGCGCaUUGUCgaUGU- -5'
11980 3' -56.5 NC_003278.1 + 28477 0.67 0.427485
Target:  5'- aCGCCGCGcGGGCUGuCGcc-CGGCUugAa -3'
miRNA:   3'- -GUGGCGC-CCUGGC-GCauuGUCGAugU- -5'
11980 3' -56.5 NC_003278.1 + 32823 0.67 0.427485
Target:  5'- uGgCGCGGGuCCGCG--ACAGCaaaUGCAc -3'
miRNA:   3'- gUgGCGCCCuGGCGCauUGUCG---AUGU- -5'
11980 3' -56.5 NC_003278.1 + 13381 0.69 0.328371
Target:  5'- uGCCGCccGGGcCCGCuUGACGGcCUACGu -3'
miRNA:   3'- gUGGCG--CCCuGGCGcAUUGUC-GAUGU- -5'
11980 3' -56.5 NC_003278.1 + 23503 0.7 0.32025
Target:  5'- uCACCGCGGGagaccagagcaaGCCGCGccGCcugcGCUACu -3'
miRNA:   3'- -GUGGCGCCC------------UGGCGCauUGu---CGAUGu -5'
11980 3' -56.5 NC_003278.1 + 7208 0.7 0.296794
Target:  5'- uGCCGCGGuGAUCaGCGUcAACcgcgAGCUGCGg -3'
miRNA:   3'- gUGGCGCC-CUGG-CGCA-UUG----UCGAUGU- -5'
11980 3' -56.5 NC_003278.1 + 23027 0.71 0.267626
Target:  5'- gCACCGCuaccugcaGGccGACCGCG--ACAGCUACGa -3'
miRNA:   3'- -GUGGCG--------CC--CUGGCGCauUGUCGAUGU- -5'
11980 3' -56.5 NC_003278.1 + 27846 0.71 0.253932
Target:  5'- aCGCCGCaGGGGCUGCGcGGCAaGC-GCAu -3'
miRNA:   3'- -GUGGCG-CCCUGGCGCaUUGU-CGaUGU- -5'
11980 3' -56.5 NC_003278.1 + 13083 1.08 0.000513
Target:  5'- gCACCGCGGGACCGCGUAACAGCUACAu -3'
miRNA:   3'- -GUGGCGCCCUGGCGCAUUGUCGAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.