miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11980 5' -63.6 NC_003278.1 + 3600 0.66 0.291657
Target:  5'- aCCCGaucaucCUGCCGaACGG-CGCGgaauugcacuuccUCGGCa -3'
miRNA:   3'- -GGGCgc----GGCGGC-UGCCaGCGC-------------AGCCG- -5'
11980 5' -63.6 NC_003278.1 + 12336 0.66 0.292355
Target:  5'- gCCCGguaugaCGCCGCCGugGGUaugacCGaccaGGCu -3'
miRNA:   3'- -GGGC------GCGGCGGCugCCA-----GCgcagCCG- -5'
11980 5' -63.6 NC_003278.1 + 29321 0.69 0.182132
Target:  5'- -gCGCGCCGCUGcCGGugaagaUCGCacCGGCg -3'
miRNA:   3'- ggGCGCGGCGGCuGCC------AGCGcaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 31917 0.75 0.065703
Target:  5'- gUCgGCGcCCGCCGGCGG-CGCGgCGGa -3'
miRNA:   3'- -GGgCGC-GGCGGCUGCCaGCGCaGCCg -5'
11980 5' -63.6 NC_003278.1 + 12107 0.69 0.177492
Target:  5'- aCCGCGCCGUCG-CGGUagguggUGCGaugcagGGCg -3'
miRNA:   3'- gGGCGCGGCGGCuGCCA------GCGCag----CCG- -5'
11980 5' -63.6 NC_003278.1 + 33032 0.72 0.110319
Target:  5'- gCCGCGCacugGCCGACac-CGCGcCGGCg -3'
miRNA:   3'- gGGCGCGg---CGGCUGccaGCGCaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 29879 0.78 0.032745
Target:  5'- gCgGCGCCGCCGGCGcggcuguuGUCGCugcgGUCGGCc -3'
miRNA:   3'- gGgCGCGGCGGCUGC--------CAGCG----CAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 22288 0.69 0.164196
Target:  5'- aCUCGauCCGCCG-CGGggUGcCGUCGGCg -3'
miRNA:   3'- -GGGCgcGGCGGCuGCCa-GC-GCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 32315 0.7 0.144018
Target:  5'- gCCGaggauGUCGCCGACGG-CGCG-CaGGCu -3'
miRNA:   3'- gGGCg----CGGCGGCUGCCaGCGCaG-CCG- -5'
11980 5' -63.6 NC_003278.1 + 17130 0.72 0.107388
Target:  5'- aCCgGCGUaucgaGUggaaaGGCGGUgGCGUCGGCg -3'
miRNA:   3'- -GGgCGCGg----CGg----CUGCCAgCGCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 23111 0.73 0.086444
Target:  5'- aCgCGCGCaCGCCGuCGuagcuGUCGCGgUCGGCc -3'
miRNA:   3'- -GgGCGCG-GCGGCuGC-----CAGCGC-AGCCG- -5'
11980 5' -63.6 NC_003278.1 + 2983 0.68 0.186879
Target:  5'- gUgGCGCCuCCGGCGGUacCGgG-CGGCa -3'
miRNA:   3'- gGgCGCGGcGGCUGCCA--GCgCaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 17299 0.71 0.120855
Target:  5'- gCUGaCGCCGCCGAugaccgcgcuauUGGUCGCGgcuucauccucgccCGGCu -3'
miRNA:   3'- gGGC-GCGGCGGCU------------GCCAGCGCa-------------GCCG- -5'
11980 5' -63.6 NC_003278.1 + 21412 0.71 0.122809
Target:  5'- gCgGCGCCGCCGACG--CGCuggaCGGCg -3'
miRNA:   3'- gGgCGCGGCGGCUGCcaGCGca--GCCG- -5'
11980 5' -63.6 NC_003278.1 + 13175 0.7 0.144018
Target:  5'- -aCGCGaCCGUCGGCGG-CGCG--GGCg -3'
miRNA:   3'- ggGCGC-GGCGGCUGCCaGCGCagCCG- -5'
11980 5' -63.6 NC_003278.1 + 9650 0.69 0.159967
Target:  5'- gCUGCuGCCGCUGuuGGUCaG-GUCGGCc -3'
miRNA:   3'- gGGCG-CGGCGGCugCCAG-CgCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 31635 0.66 0.284067
Target:  5'- gCgGCGCCGCaggcuucaaccgGGCGcGUcCGCGggUCGGCa -3'
miRNA:   3'- gGgCGCGGCGg-----------CUGC-CA-GCGC--AGCCG- -5'
11980 5' -63.6 NC_003278.1 + 32024 0.7 0.135519
Target:  5'- aCCCgGUGCCGCUGAUcGUCuucgagaacgucccGCGUCuGGCg -3'
miRNA:   3'- -GGG-CGCGGCGGCUGcCAG--------------CGCAG-CCG- -5'
11980 5' -63.6 NC_003278.1 + 7761 0.66 0.278645
Target:  5'- gCUGUGCUGgCGgcacuACGGUCGCaccGcCGGCg -3'
miRNA:   3'- gGGCGCGGCgGC-----UGCCAGCG---CaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 29370 0.66 0.271985
Target:  5'- gCCUGCuaCGUucugggcgacgUGGCGGUgCGCGgCGGCg -3'
miRNA:   3'- -GGGCGcgGCG-----------GCUGCCA-GCGCaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.