miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11980 5' -63.6 NC_003278.1 + 22041 0.67 0.228905
Target:  5'- gCgGCuGCUGCUGGCGuGUCGCcacUCGGUc -3'
miRNA:   3'- gGgCG-CGGCGGCUGC-CAGCGc--AGCCG- -5'
11980 5' -63.6 NC_003278.1 + 14274 0.67 0.227194
Target:  5'- -gCGCGCCGCCGGC-GUCaccgaugagcauauGgGUgGGCu -3'
miRNA:   3'- ggGCGCGGCGGCUGcCAG--------------CgCAgCCG- -5'
11980 5' -63.6 NC_003278.1 + 19895 0.67 0.223244
Target:  5'- gCCUGgGUgGCCGACaucGUUGCGUCGa- -3'
miRNA:   3'- -GGGCgCGgCGGCUGc--CAGCGCAGCcg -5'
11980 5' -63.6 NC_003278.1 + 30412 0.67 0.217702
Target:  5'- aCUCG-GCCaCCu-CGGgCGCGUCGGCg -3'
miRNA:   3'- -GGGCgCGGcGGcuGCCaGCGCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 30554 0.68 0.212279
Target:  5'- gCCGCGUCGgccaccuuCUGGCGGU-G-GUCGGCg -3'
miRNA:   3'- gGGCGCGGC--------GGCUGCCAgCgCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 22712 0.68 0.212279
Target:  5'- -gCGCGCCGCUGugcuCGGUUuCGUCGa- -3'
miRNA:   3'- ggGCGCGGCGGCu---GCCAGcGCAGCcg -5'
11980 5' -63.6 NC_003278.1 + 26894 0.68 0.206972
Target:  5'- aCCGCGCCugaUGGCGGUgGCGacgccccUGGCg -3'
miRNA:   3'- gGGCGCGGcg-GCUGCCAgCGCa------GCCG- -5'
11980 5' -63.6 NC_003278.1 + 23491 0.68 0.206972
Target:  5'- gCCGguguaGUCGCCGcCGGUguCGUCGGCc -3'
miRNA:   3'- gGGCg----CGGCGGCuGCCAgcGCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 22080 0.68 0.196702
Target:  5'- gCCGCGaCCGaCGAacUGG-CGCGcCGGCu -3'
miRNA:   3'- gGGCGC-GGCgGCU--GCCaGCGCaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 28267 0.68 0.191736
Target:  5'- gCCCGgGCCGaggCGGCGGguucCuuGUCGGUg -3'
miRNA:   3'- -GGGCgCGGCg--GCUGCCa---GcgCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 32552 0.68 0.188809
Target:  5'- aCCCGCGCgCGCCGGCaaaCGCccugcaauaccagcaGUaCGGCg -3'
miRNA:   3'- -GGGCGCG-GCGGCUGccaGCG---------------CA-GCCG- -5'
11980 5' -63.6 NC_003278.1 + 2983 0.68 0.186879
Target:  5'- gUgGCGCCuCCGGCGGUacCGgG-CGGCa -3'
miRNA:   3'- gGgCGCGGcGGCUGCCA--GCgCaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 29321 0.69 0.182132
Target:  5'- -gCGCGCCGCUGcCGGugaagaUCGCacCGGCg -3'
miRNA:   3'- ggGCGCGGCGGCuGCC------AGCGcaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 12107 0.69 0.177492
Target:  5'- aCCGCGCCGUCG-CGGUagguggUGCGaugcagGGCg -3'
miRNA:   3'- gGGCGCGGCGGCuGCCA------GCGCag----CCG- -5'
11980 5' -63.6 NC_003278.1 + 21348 0.69 0.168526
Target:  5'- -gCGCGCCGUCcag---CGCGUCGGCg -3'
miRNA:   3'- ggGCGCGGCGGcugccaGCGCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 22288 0.69 0.164196
Target:  5'- aCUCGauCCGCCG-CGGggUGcCGUCGGCg -3'
miRNA:   3'- -GGGCgcGGCGGCuGCCa-GC-GCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 9650 0.69 0.159967
Target:  5'- gCUGCuGCCGCUGuuGGUCaG-GUCGGCc -3'
miRNA:   3'- gGGCG-CGGCGGCugCCAG-CgCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 12099 0.7 0.150611
Target:  5'- aCCUGCGCgcaguucuuccCGCCGGCGGuaccaccgaacucaUCaGCGaCGGCg -3'
miRNA:   3'- -GGGCGCG-----------GCGGCUGCC--------------AG-CGCaGCCG- -5'
11980 5' -63.6 NC_003278.1 + 28516 0.7 0.144018
Target:  5'- aUCGCGCUGCUGcaccACGGcaucgacgcCGUGUCGGCc -3'
miRNA:   3'- gGGCGCGGCGGC----UGCCa--------GCGCAGCCG- -5'
11980 5' -63.6 NC_003278.1 + 13175 0.7 0.144018
Target:  5'- -aCGCGaCCGUCGGCGG-CGCG--GGCg -3'
miRNA:   3'- ggGCGC-GGCGGCUGCCaGCGCagCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.