Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11982 | 3' | -53.5 | NC_003278.1 | + | 12761 | 0.66 | 0.680259 |
Target: 5'- uGC-UCCaccgCGuGUGGUGGCGGCAacuGGCu -3' miRNA: 3'- cUGuAGGa---GCuCACCACCGUUGU---CUG- -5' |
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11982 | 3' | -53.5 | NC_003278.1 | + | 18091 | 0.66 | 0.633971 |
Target: 5'- --gGUCCUCGAGcGGcGGCAcCGGGg -3' miRNA: 3'- cugUAGGAGCUCaCCaCCGUuGUCUg -5' |
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11982 | 3' | -53.5 | NC_003278.1 | + | 8730 | 0.68 | 0.564689 |
Target: 5'- cGCGUCCUCG-GUGGcGGCGccgaAguGGCc -3' miRNA: 3'- cUGUAGGAGCuCACCaCCGU----UguCUG- -5' |
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11982 | 3' | -53.5 | NC_003278.1 | + | 27870 | 0.68 | 0.561264 |
Target: 5'- cGCAUCCUCGAGgaccgcccacacauUGcUGGCAucugcCGGACg -3' miRNA: 3'- cUGUAGGAGCUC--------------ACcACCGUu----GUCUG- -5' |
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11982 | 3' | -53.5 | NC_003278.1 | + | 18345 | 0.7 | 0.444449 |
Target: 5'- cGGCAUCCaguUCGAGUGGacccucGGCGGCcuGGAUc -3' miRNA: 3'- -CUGUAGG---AGCUCACCa-----CCGUUG--UCUG- -5' |
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11982 | 3' | -53.5 | NC_003278.1 | + | 17099 | 0.71 | 0.394685 |
Target: 5'- cGGCGUCUUCG-GcGGUGGCuacCAGGCc -3' miRNA: 3'- -CUGUAGGAGCuCaCCACCGuu-GUCUG- -5' |
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11982 | 3' | -53.5 | NC_003278.1 | + | 2365 | 0.72 | 0.314701 |
Target: 5'- gGGCAUCCucgacuaucUCGAGUGcUGGCcgAACGGGCg -3' miRNA: 3'- -CUGUAGG---------AGCUCACcACCG--UUGUCUG- -5' |
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11982 | 3' | -53.5 | NC_003278.1 | + | 13866 | 1.09 | 0.000754 |
Target: 5'- cGACAUCCUCGAGUGGUGGCAACAGACc -3' miRNA: 3'- -CUGUAGGAGCUCACCACCGUUGUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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