miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11982 5' -53.6 NC_003278.1 + 22135 0.66 0.739297
Target:  5'- cGgGUCggCCUGGC-CCauggUCGAGggCACCg -3'
miRNA:   3'- -CgCAG--GGGCCGuGGa---AGCUUuaGUGG- -5'
11982 5' -53.6 NC_003278.1 + 32057 0.66 0.739297
Target:  5'- cGCGUCUggcgagccgcggCCGGCACCUgcUgGAccaGAUCaacaGCCu -3'
miRNA:   3'- -CGCAGG------------GGCCGUGGA--AgCU---UUAG----UGG- -5'
11982 5' -53.6 NC_003278.1 + 32020 0.66 0.727342
Target:  5'- aGCGUCaacucguucagcgCCUGGUA-CUUCGGAGUCAg- -3'
miRNA:   3'- -CGCAG-------------GGGCCGUgGAAGCUUUAGUgg -5'
11982 5' -53.6 NC_003278.1 + 26923 0.66 0.706415
Target:  5'- aGCG-CCUCGGCgaugauGCggUCGAccUCACCg -3'
miRNA:   3'- -CGCaGGGGCCG------UGgaAGCUuuAGUGG- -5'
11982 5' -53.6 NC_003278.1 + 13676 0.66 0.695283
Target:  5'- uGUGgaaCCCCaGCACCUgcccGGUCGCCc -3'
miRNA:   3'- -CGCa--GGGGcCGUGGAagcuUUAGUGG- -5'
11982 5' -53.6 NC_003278.1 + 31804 0.66 0.695283
Target:  5'- aGgGUgCCCGGgaCACCggccaggcgcUCGAAGUCGCg -3'
miRNA:   3'- -CgCAgGGGCC--GUGGa---------AGCUUUAGUGg -5'
11982 5' -53.6 NC_003278.1 + 5441 0.66 0.684087
Target:  5'- gGCGUCagCGGCACCaUCGccagccgUACCg -3'
miRNA:   3'- -CGCAGggGCCGUGGaAGCuuua---GUGG- -5'
11982 5' -53.6 NC_003278.1 + 2325 0.66 0.684087
Target:  5'- aUG-CCCCGGCcgucgagcACCggcaUCG-GAUCACCg -3'
miRNA:   3'- cGCaGGGGCCG--------UGGa---AGCuUUAGUGG- -5'
11982 5' -53.6 NC_003278.1 + 8339 0.66 0.684087
Target:  5'- aGCGaccUCCUcggaugCGGCGCCagaggucgUCGAAGUCgACCu -3'
miRNA:   3'- -CGC---AGGG------GCCGUGGa-------AGCUUUAG-UGG- -5'
11982 5' -53.6 NC_003278.1 + 3065 0.67 0.672837
Target:  5'- cGCG-CUgCGGC-CgUUCGGuGAUCGCCa -3'
miRNA:   3'- -CGCaGGgGCCGuGgAAGCU-UUAGUGG- -5'
11982 5' -53.6 NC_003278.1 + 22247 0.67 0.661548
Target:  5'- cGCGUCUCgGuGaCGCgUUCGA--UCACCc -3'
miRNA:   3'- -CGCAGGGgC-C-GUGgAAGCUuuAGUGG- -5'
11982 5' -53.6 NC_003278.1 + 21238 0.67 0.638891
Target:  5'- gGCGUCCUgGGCuACCUgggcaUCGAcc-UGCCg -3'
miRNA:   3'- -CGCAGGGgCCG-UGGA-----AGCUuuaGUGG- -5'
11982 5' -53.6 NC_003278.1 + 16582 0.67 0.638891
Target:  5'- -aGUCCCUGGC-CCUgagcgUCGAGcagUGCCu -3'
miRNA:   3'- cgCAGGGGCCGuGGA-----AGCUUua-GUGG- -5'
11982 5' -53.6 NC_003278.1 + 8863 0.68 0.616209
Target:  5'- gGCGagCUCCGGCGgCgaCGAGGUCGgCg -3'
miRNA:   3'- -CGCa-GGGGCCGUgGaaGCUUUAGUgG- -5'
11982 5' -53.6 NC_003278.1 + 20690 0.68 0.604885
Target:  5'- -aGcCCCUGGCugCg-CGAGcUCGCCg -3'
miRNA:   3'- cgCaGGGGCCGugGaaGCUUuAGUGG- -5'
11982 5' -53.6 NC_003278.1 + 9075 0.68 0.603754
Target:  5'- gGCGgugCCgCCGGCAuagccgcCCgggCGAGGguUCACCa -3'
miRNA:   3'- -CGCa--GG-GGCCGU-------GGaa-GCUUU--AGUGG- -5'
11982 5' -53.6 NC_003278.1 + 697 0.68 0.593586
Target:  5'- gGCGaacauUCCCCuagugGGCGgCgcUGAGAUCACCa -3'
miRNA:   3'- -CGC-----AGGGG-----CCGUgGaaGCUUUAGUGG- -5'
11982 5' -53.6 NC_003278.1 + 13214 0.68 0.582321
Target:  5'- aGCG-CCCCGGCggACCUgcuggccaucgUCGA---CGCCu -3'
miRNA:   3'- -CGCaGGGGCCG--UGGA-----------AGCUuuaGUGG- -5'
11982 5' -53.6 NC_003278.1 + 20872 0.68 0.582321
Target:  5'- cGCaGUCCgcuucaugcUCGGCACCaUCGGcauUCGCCu -3'
miRNA:   3'- -CG-CAGG---------GGCCGUGGaAGCUuu-AGUGG- -5'
11982 5' -53.6 NC_003278.1 + 10793 0.68 0.582321
Target:  5'- uGCGgagCCUGGCGCUccCGAAGUCAgCu -3'
miRNA:   3'- -CGCag-GGGCCGUGGaaGCUUUAGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.