miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11984 3' -62.8 NC_003278.1 + 22601 0.66 0.281031
Target:  5'- uCUGGCUGGgcuggagugaCAGCGGaCUGGUCGacaaGGg -3'
miRNA:   3'- -GACCGGCC----------GUUGCCgGACCAGCcg--CC- -5'
11984 3' -62.8 NC_003278.1 + 20008 0.66 0.274173
Target:  5'- aCUGGCCcugGGCGACuuCCUuGUCGGUGa -3'
miRNA:   3'- -GACCGG---CCGUUGccGGAcCAGCCGCc -5'
11984 3' -62.8 NC_003278.1 + 31616 0.66 0.26745
Target:  5'- ---uUCuGCuGCGGCCUGGgCGGCGGc -3'
miRNA:   3'- gaccGGcCGuUGCCGGACCaGCCGCC- -5'
11984 3' -62.8 NC_003278.1 + 1603 0.66 0.26745
Target:  5'- -aGGCCGGCGA--G-CUGGUCGucGCGGc -3'
miRNA:   3'- gaCCGGCCGUUgcCgGACCAGC--CGCC- -5'
11984 3' -62.8 NC_003278.1 + 22954 0.66 0.26348
Target:  5'- -cGGCCGGUggcggcaagacugccAGCGGCCUGGcgCuGCc- -3'
miRNA:   3'- gaCCGGCCG---------------UUGCCGGACCa-GcCGcc -5'
11984 3' -62.8 NC_003278.1 + 6487 0.66 0.26086
Target:  5'- -aGGCCGGCAAgGGCgCccaGGacgaGGUGGu -3'
miRNA:   3'- gaCCGGCCGUUgCCG-Ga--CCag--CCGCC- -5'
11984 3' -62.8 NC_003278.1 + 8864 0.66 0.26086
Target:  5'- -aGGCgagcucCGGCGGCGaCgaGGUCGGCGu -3'
miRNA:   3'- gaCCG------GCCGUUGCcGgaCCAGCCGCc -5'
11984 3' -62.8 NC_003278.1 + 18296 0.66 0.254404
Target:  5'- -gGGgCGGCAugaACGGCCcGGUCaaGGCc- -3'
miRNA:   3'- gaCCgGCCGU---UGCCGGaCCAG--CCGcc -5'
11984 3' -62.8 NC_003278.1 + 15155 0.66 0.254404
Target:  5'- -cGGuaCCGGCAAUGGUaUUGGUcaggcugcaaCGGCGGu -3'
miRNA:   3'- gaCC--GGCCGUUGCCG-GACCA----------GCCGCC- -5'
11984 3' -62.8 NC_003278.1 + 5018 0.66 0.254404
Target:  5'- cCUGGCCGaacuCGGCUUGGgu-GCGGg -3'
miRNA:   3'- -GACCGGCcguuGCCGGACCagcCGCC- -5'
11984 3' -62.8 NC_003278.1 + 32073 0.66 0.248705
Target:  5'- -cGGCCGGCAccuGCuggaccagaucaacaGCCUGcUCGGUGGc -3'
miRNA:   3'- gaCCGGCCGU---UGc--------------CGGACcAGCCGCC- -5'
11984 3' -62.8 NC_003278.1 + 7896 0.67 0.241884
Target:  5'- -aGGCCaggggggaGGguGgGGCCgUGGUCGGCc- -3'
miRNA:   3'- gaCCGG--------CCguUgCCGG-ACCAGCCGcc -5'
11984 3' -62.8 NC_003278.1 + 13194 0.67 0.235819
Target:  5'- -aGGCCgcccagGGCAACGGCagcgcccCGGCGGa -3'
miRNA:   3'- gaCCGG------CCGUUGCCGgacca--GCCGCC- -5'
11984 3' -62.8 NC_003278.1 + 31919 0.67 0.229883
Target:  5'- -cGGUCGGCGcCcGCCggcGGcgCGGCGGa -3'
miRNA:   3'- gaCCGGCCGUuGcCGGa--CCa-GCCGCC- -5'
11984 3' -62.8 NC_003278.1 + 21306 0.67 0.229883
Target:  5'- -gGGCCuGGUgAACGGCCUGcUCGcCGGc -3'
miRNA:   3'- gaCCGG-CCG-UUGCCGGACcAGCcGCC- -5'
11984 3' -62.8 NC_003278.1 + 29533 0.67 0.229296
Target:  5'- aCUGGCuguggaccugcuuCGGCGccaAgGGCCUGGU-GGCGc -3'
miRNA:   3'- -GACCG-------------GCCGU---UgCCGGACCAgCCGCc -5'
11984 3' -62.8 NC_003278.1 + 10481 0.67 0.226381
Target:  5'- uUGGCCgggcgccugaucugcGGCGucucgagcaugACGGCCUcGGugggcuUCGGCGGc -3'
miRNA:   3'- gACCGG---------------CCGU-----------UGCCGGA-CC------AGCCGCC- -5'
11984 3' -62.8 NC_003278.1 + 4535 0.67 0.224072
Target:  5'- cCUGGCCGGC--UGGUgaGuUCGGCGc -3'
miRNA:   3'- -GACCGGCCGuuGCCGgaCcAGCCGCc -5'
11984 3' -62.8 NC_003278.1 + 31264 0.67 0.224072
Target:  5'- -aGcCCGG-AGCaGCCUGG-CGGCGGg -3'
miRNA:   3'- gaCcGGCCgUUGcCGGACCaGCCGCC- -5'
11984 3' -62.8 NC_003278.1 + 11948 0.67 0.218388
Target:  5'- -cGGUCGGCGcCGGCCcg--CGGCGa -3'
miRNA:   3'- gaCCGGCCGUuGCCGGaccaGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.