miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11984 5' -54.4 NC_003278.1 + 29486 0.66 0.617003
Target:  5'- -gCUGCaGAUCGcCACCGaCGCCa--- -3'
miRNA:   3'- caGACGcCUAGC-GUGGUaGCGGaaug -5'
11984 5' -54.4 NC_003278.1 + 32544 0.66 0.605489
Target:  5'- uGUC-GCGGAcccgcgCGCGCCGgcaaaCGCCcUGCa -3'
miRNA:   3'- -CAGaCGCCUa-----GCGUGGUa----GCGGaAUG- -5'
11984 5' -54.4 NC_003278.1 + 17193 0.66 0.594
Target:  5'- -cUUGCGGGcagCGUACCGcuggugccCGCCUUGCc -3'
miRNA:   3'- caGACGCCUa--GCGUGGUa-------GCGGAAUG- -5'
11984 5' -54.4 NC_003278.1 + 31391 0.67 0.57114
Target:  5'- cGUCgGCGGcUCGCAC--UCGCCcaGCg -3'
miRNA:   3'- -CAGaCGCCuAGCGUGguAGCGGaaUG- -5'
11984 5' -54.4 NC_003278.1 + 1111 0.67 0.559786
Target:  5'- -cCUGUGGcUUGCGCCAacacuccaUUGCCUUGu -3'
miRNA:   3'- caGACGCCuAGCGUGGU--------AGCGGAAUg -5'
11984 5' -54.4 NC_003278.1 + 28485 0.67 0.541757
Target:  5'- -gCUGUGGAucgucgaagguaucuUCGaCGCCAUCGCgCUgcUGCa -3'
miRNA:   3'- caGACGCCU---------------AGC-GUGGUAGCG-GA--AUG- -5'
11984 5' -54.4 NC_003278.1 + 10740 0.68 0.515094
Target:  5'- -gCUGguCGGAUCGCACgCAUCGCg---- -3'
miRNA:   3'- caGAC--GCCUAGCGUG-GUAGCGgaaug -5'
11984 5' -54.4 NC_003278.1 + 7520 0.68 0.493289
Target:  5'- aGUC-GCGGAUCGC-CCAgCGCUggucGCg -3'
miRNA:   3'- -CAGaCGCCUAGCGuGGUaGCGGaa--UG- -5'
11984 5' -54.4 NC_003278.1 + 16993 0.68 0.471916
Target:  5'- --aUGaCGGGacccgccccauUCGCACCAUCGCCa--- -3'
miRNA:   3'- cagAC-GCCU-----------AGCGUGGUAGCGGaaug -5'
11984 5' -54.4 NC_003278.1 + 19931 0.68 0.471916
Target:  5'- aUCUGCGGAUCGU-CCuugCGCUcgaUGCg -3'
miRNA:   3'- cAGACGCCUAGCGuGGua-GCGGa--AUG- -5'
11984 5' -54.4 NC_003278.1 + 32420 0.68 0.471916
Target:  5'- -gCUGcCGGcUCGCACCAgUGCCagGCg -3'
miRNA:   3'- caGAC-GCCuAGCGUGGUaGCGGaaUG- -5'
11984 5' -54.4 NC_003278.1 + 19395 0.69 0.41082
Target:  5'- --gUGCGGAaggCGCGCaCGUCGCUcUGCu -3'
miRNA:   3'- cagACGCCUa--GCGUG-GUAGCGGaAUG- -5'
11984 5' -54.4 NC_003278.1 + 3244 0.7 0.391571
Target:  5'- --aUGCGGuccUCGCACaGUCGcCCUUGCu -3'
miRNA:   3'- cagACGCCu--AGCGUGgUAGC-GGAAUG- -5'
11984 5' -54.4 NC_003278.1 + 21851 0.75 0.181421
Target:  5'- gGUCUGCGGuGUCGCuGCCcgCGCCg--- -3'
miRNA:   3'- -CAGACGCC-UAGCG-UGGuaGCGGaaug -5'
11984 5' -54.4 NC_003278.1 + 14663 1.08 0.000687
Target:  5'- uGUCUGCGGAUCGCACCAUCGCCUUACc -3'
miRNA:   3'- -CAGACGCCUAGCGUGGUAGCGGAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.