Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11986 | 5' | -54.6 | NC_003278.1 | + | 15234 | 1.08 | 0.000804 |
Target: 5'- gUCAGCGGCUCGACAACGUUCGACGGUa -3' miRNA: 3'- -AGUCGCCGAGCUGUUGCAAGCUGCCA- -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 2275 | 0.66 | 0.618145 |
Target: 5'- gCGGCGGCUCGuACcaccgccCGUUCGGCc-- -3' miRNA: 3'- aGUCGCCGAGC-UGuu-----GCAAGCUGcca -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 5444 | 0.67 | 0.611352 |
Target: 5'- gUCAGCGGCaccaUCGcCAGcCGUaccgauaccacuggCGACGGUg -3' miRNA: 3'- -AGUCGCCG----AGCuGUU-GCAa-------------GCUGCCA- -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 31662 | 0.67 | 0.59553 |
Target: 5'- gUCcGCGGgUCGGCAACG-UCGA-GGc -3' miRNA: 3'- -AGuCGCCgAGCUGUUGCaAGCUgCCa -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 30830 | 0.67 | 0.584266 |
Target: 5'- aCAGCGGCcagaGCGGCGUgaUCGGuCGGUu -3' miRNA: 3'- aGUCGCCGagc-UGUUGCA--AGCU-GCCA- -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 12282 | 0.68 | 0.539724 |
Target: 5'- aCGGCGGCgucauaccgGGCGGCGcuaCGACGGg -3' miRNA: 3'- aGUCGCCGag-------CUGUUGCaa-GCUGCCa -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 31392 | 0.68 | 0.528758 |
Target: 5'- gUCGGCGGCUCGcACu-CGcccagCGAUGGc -3' miRNA: 3'- -AGUCGCCGAGC-UGuuGCaa---GCUGCCa -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 14057 | 0.68 | 0.507084 |
Target: 5'- cCA-CGGCcUGGCGACGaUCGACGGc -3' miRNA: 3'- aGUcGCCGaGCUGUUGCaAGCUGCCa -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 32107 | 0.69 | 0.434567 |
Target: 5'- cUCGGUGGCuUCGGCuACGccgUGGCGGa -3' miRNA: 3'- -AGUCGCCG-AGCUGuUGCaa-GCUGCCa -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 14627 | 0.7 | 0.395919 |
Target: 5'- --uGCuGGC-CGGCAACGgccuggUCGGCGGUg -3' miRNA: 3'- aguCG-CCGaGCUGUUGCa-----AGCUGCCA- -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 32992 | 0.75 | 0.196964 |
Target: 5'- --cGCGGCaCGACAACGgUCGAUGGa -3' miRNA: 3'- aguCGCCGaGCUGUUGCaAGCUGCCa -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 13666 | 0.68 | 0.516793 |
Target: 5'- uUCGGCGGCcaggcgcucaaguUCGGUGGCGUUgCGugGGa -3' miRNA: 3'- -AGUCGCCG-------------AGCUGUUGCAA-GCugCCa -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 5389 | 0.68 | 0.533135 |
Target: 5'- cCAGCuucugcuggacacucGGCUCGACGGCGaaggucuggaCGGCGGa -3' miRNA: 3'- aGUCG---------------CCGAGCUGUUGCaa--------GCUGCCa -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 29914 | 0.68 | 0.536426 |
Target: 5'- aCAGCGGCUUGAacuCGUcccagucgaaggacUUGGCGGc -3' miRNA: 3'- aGUCGCCGAGCUguuGCA--------------AGCUGCCa -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 27804 | 0.67 | 0.561876 |
Target: 5'- cUCAGCcuGGUUCuGGuCGAC-UUCGACGGUg -3' miRNA: 3'- -AGUCG--CCGAG-CU-GUUGcAAGCUGCCA- -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 32328 | 0.66 | 0.618145 |
Target: 5'- gCAGCGGCaugCGGCcgagGAUGUcgcCGACGGc -3' miRNA: 3'- aGUCGCCGa--GCUG----UUGCAa--GCUGCCa -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 32600 | 0.66 | 0.618145 |
Target: 5'- cCGGCGcGCgcgggccgCGACAGagaaugcgcCGUUCGugGGg -3' miRNA: 3'- aGUCGC-CGa-------GCUGUU---------GCAAGCugCCa -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 17694 | 0.66 | 0.648743 |
Target: 5'- gUCGGCGcugaugccggucacGCcguugaCGGCGACGUUCGACaGGg -3' miRNA: 3'- -AGUCGC--------------CGa-----GCUGUUGCAAGCUG-CCa -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 7827 | 0.66 | 0.651008 |
Target: 5'- cCGGCGGUgcgacCGuagugccgccagcACAGCGccUCGACGGUg -3' miRNA: 3'- aGUCGCCGa----GC-------------UGUUGCa-AGCUGCCA- -5' |
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11986 | 5' | -54.6 | NC_003278.1 | + | 17111 | 0.72 | 0.294073 |
Target: 5'- -aGGCGGUggCGuCGGCGUcuUCGGCGGUg -3' miRNA: 3'- agUCGCCGa-GCuGUUGCA--AGCUGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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