miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11987 5' -60.7 NC_003278.1 + 31433 0.66 0.330122
Target:  5'- cGCCGacGUGG-UUGUGCuagccuUGGCGCcGCCGc -3'
miRNA:   3'- -CGGC--CGCCaGACAUG------ACCGCGaCGGC- -5'
11987 5' -60.7 NC_003278.1 + 5703 0.66 0.322207
Target:  5'- aGCCgaucaucaGGCGGUCgagGgcCUGGCGCUugaggaucgcGUCGc -3'
miRNA:   3'- -CGG--------CCGCCAGa--CauGACCGCGA----------CGGC- -5'
11987 5' -60.7 NC_003278.1 + 27380 0.67 0.299317
Target:  5'- -gCGGCGGcUUGcUGCaUGGUGCUGCgGu -3'
miRNA:   3'- cgGCCGCCaGAC-AUG-ACCGCGACGgC- -5'
11987 5' -60.7 NC_003278.1 + 1483 0.67 0.299317
Target:  5'- uGCaGGCGcGUCUGcAUUGGCGCgaguuccaagcuUGCCc -3'
miRNA:   3'- -CGgCCGC-CAGACaUGACCGCG------------ACGGc -5'
11987 5' -60.7 NC_003278.1 + 21654 0.67 0.291971
Target:  5'- cGCCGGCGccaUCgGUGCccUGGUGCUcggcGCCa -3'
miRNA:   3'- -CGGCCGCc--AGaCAUG--ACCGCGA----CGGc -5'
11987 5' -60.7 NC_003278.1 + 20889 0.67 0.277705
Target:  5'- uGCCGGCGaGg--GUGaUGGCaagGCUGCCa -3'
miRNA:   3'- -CGGCCGC-CagaCAUgACCG---CGACGGc -5'
11987 5' -60.7 NC_003278.1 + 9093 0.67 0.270783
Target:  5'- cGCCaGGCGcug-GUGCUcGGCGgUGCCGc -3'
miRNA:   3'- -CGG-CCGCcagaCAUGA-CCGCgACGGC- -5'
11987 5' -60.7 NC_003278.1 + 12160 0.67 0.266697
Target:  5'- cGCCGGCGGgaagaaCUGcgcgcaggugguggGCU-GCGCUGUCGu -3'
miRNA:   3'- -CGGCCGCCa-----GACa-------------UGAcCGCGACGGC- -5'
11987 5' -60.7 NC_003278.1 + 6724 0.68 0.257356
Target:  5'- cGCCGGUcuUCUGUGCcuUGaGCGCgGCCu -3'
miRNA:   3'- -CGGCCGccAGACAUG--AC-CGCGaCGGc -5'
11987 5' -60.7 NC_003278.1 + 12411 0.68 0.256044
Target:  5'- aCUGGCGGaUgUGUGCcaagcgggcgagGGCGCcGCCGg -3'
miRNA:   3'- cGGCCGCC-AgACAUGa-----------CCGCGaCGGC- -5'
11987 5' -60.7 NC_003278.1 + 19581 0.68 0.232141
Target:  5'- uGCagGGCGuGgCUGUGCUgcaGGUGCUGCUGc -3'
miRNA:   3'- -CGg-CCGC-CaGACAUGA---CCGCGACGGC- -5'
11987 5' -60.7 NC_003278.1 + 32376 0.69 0.220332
Target:  5'- aGCCGGCaG-Cg--ACUGGCGCaGCCu -3'
miRNA:   3'- -CGGCCGcCaGacaUGACCGCGaCGGc -5'
11987 5' -60.7 NC_003278.1 + 13272 0.69 0.220332
Target:  5'- gGCCaGCaGGUCcGccggGGCGCUGCCGu -3'
miRNA:   3'- -CGGcCG-CCAGaCaugaCCGCGACGGC- -5'
11987 5' -60.7 NC_003278.1 + 14795 0.69 0.214622
Target:  5'- uGCCGGCGGUgacgaUGccAUUGGCGUUGaCGg -3'
miRNA:   3'- -CGGCCGCCAg----ACa-UGACCGCGACgGC- -5'
11987 5' -60.7 NC_003278.1 + 19637 0.69 0.20904
Target:  5'- uGCUGGCcgaGGUUgcggGUGCUgagccGGCGUUGCUGa -3'
miRNA:   3'- -CGGCCG---CCAGa---CAUGA-----CCGCGACGGC- -5'
11987 5' -60.7 NC_003278.1 + 22811 0.69 0.203583
Target:  5'- aGCCGGUGcUCgcgccgGcGCUGGCGggcCUGCCGa -3'
miRNA:   3'- -CGGCCGCcAGa-----CaUGACCGC---GACGGC- -5'
11987 5' -60.7 NC_003278.1 + 23295 0.69 0.19825
Target:  5'- gGCCGGCcccuGGcgagcgcguagCUGaGCgUGGCGCUGCCa -3'
miRNA:   3'- -CGGCCG----CCa----------GACaUG-ACCGCGACGGc -5'
11987 5' -60.7 NC_003278.1 + 29959 0.69 0.193039
Target:  5'- uGCCGGCGGUCUu--CUGGC-CgGUCa -3'
miRNA:   3'- -CGGCCGCCAGAcauGACCGcGaCGGc -5'
11987 5' -60.7 NC_003278.1 + 22059 0.71 0.15896
Target:  5'- cGCCGGCuGGgcaccgaugcggCUGcUGCUGGCGUgucGCCa -3'
miRNA:   3'- -CGGCCG-CCa-----------GAC-AUGACCGCGa--CGGc -5'
11987 5' -60.7 NC_003278.1 + 22955 0.74 0.084092
Target:  5'- gGCCGGUGGcggcaagaCUGccagcggcCUGGCGCUGCCGc -3'
miRNA:   3'- -CGGCCGCCa-------GACau------GACCGCGACGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.