Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11988 | 5' | -50.3 | NC_003278.1 | + | 16295 | 1.11 | 0.001327 |
Target: 5'- aCGGUUGCAGAAAAAGCCAGAACGGCGa -3' miRNA: 3'- -GCCAACGUCUUUUUCGGUCUUGCCGC- -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 1726 | 0.8 | 0.183975 |
Target: 5'- aGGUUGCGGAAAuuGCCAGGccccuucGCGGUc -3' miRNA: 3'- gCCAACGUCUUUuuCGGUCU-------UGCCGc -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 8395 | 0.74 | 0.384178 |
Target: 5'- gCGGcaGC-GAuguAGGCCAGGGCGGCGa -3' miRNA: 3'- -GCCaaCGuCUuu-UUCGGUCUUGCCGC- -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 8618 | 0.74 | 0.403638 |
Target: 5'- gGGUcaUGCGGAu--GGCCucagcAGGGCGGCGa -3' miRNA: 3'- gCCA--ACGUCUuuuUCGG-----UCUUGCCGC- -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 21133 | 0.73 | 0.454907 |
Target: 5'- gGGaUGUGGGAAGagauccaggcgGGCCuGAACGGCGg -3' miRNA: 3'- gCCaACGUCUUUU-----------UCGGuCUUGCCGC- -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 1807 | 0.72 | 0.487304 |
Target: 5'- uCGGUcaUGUAGAGgauGAAGCCGGcgUGGCu -3' miRNA: 3'- -GCCA--ACGUCUU---UUUCGGUCuuGCCGc -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 8241 | 0.71 | 0.555056 |
Target: 5'- aCGaagGCAGAGAAAGCCAGGuUGGUc -3' miRNA: 3'- -GCcaaCGUCUUUUUCGGUCUuGCCGc -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 19628 | 0.71 | 0.578292 |
Target: 5'- aGGUUGCGGGugcuGAGCCGGcguuGCugaGGCGc -3' miRNA: 3'- gCCAACGUCUuu--UUCGGUCu---UG---CCGC- -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 30665 | 0.69 | 0.660653 |
Target: 5'- uCGGUUGguGAGAGGGUUcuGGCgGGCGu -3' miRNA: 3'- -GCCAACguCUUUUUCGGucUUG-CCGC- -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 4331 | 0.69 | 0.672395 |
Target: 5'- gGGaUUGUAGGGcgcGGAGCUacaaGGGGCGGCGc -3' miRNA: 3'- gCC-AACGUCUU---UUUCGG----UCUUGCCGC- -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 27652 | 0.69 | 0.672395 |
Target: 5'- aGGUgcgcggGCAGAuagcGGGCCGGGaucgggaaGCGGCa -3' miRNA: 3'- gCCAa-----CGUCUuu--UUCGGUCU--------UGCCGc -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 6369 | 0.69 | 0.707308 |
Target: 5'- uGGUgcgggGCAGu---GGCCGccgccucuuGAGCGGCGg -3' miRNA: 3'- gCCAa----CGUCuuuuUCGGU---------CUUGCCGC- -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 33213 | 0.69 | 0.707308 |
Target: 5'- cCGGcUGCGGccGAGGCCAucgccggcguGAugGGCa -3' miRNA: 3'- -GCCaACGUCuuUUUCGGU----------CUugCCGc -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 32510 | 0.69 | 0.707308 |
Target: 5'- cCGGUcGCAGc---AGCCccacGAACGGCGc -3' miRNA: 3'- -GCCAaCGUCuuuuUCGGu---CUUGCCGC- -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 26698 | 0.68 | 0.730183 |
Target: 5'- uGGUUGUcGAAcuucuucaggucGAGGCCcaggcGGGCGGCGg -3' miRNA: 3'- gCCAACGuCUU------------UUUCGGu----CUUGCCGC- -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 5738 | 0.68 | 0.752608 |
Target: 5'- gCGGUUGguGGu--AGCC---GCGGCGc -3' miRNA: 3'- -GCCAACguCUuuuUCGGucuUGCCGC- -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 9044 | 0.68 | 0.762521 |
Target: 5'- gGGUUcaccagcGCGGGGAAcugugcGGCCAGuugguCGGCGg -3' miRNA: 3'- gCCAA-------CGUCUUUU------UCGGUCuu---GCCGC- -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 30826 | 0.68 | 0.763615 |
Target: 5'- ----cGCGacAGcGGCCAGAGCGGCGu -3' miRNA: 3'- gccaaCGUcuUUuUCGGUCUUGCCGC- -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 18766 | 0.67 | 0.785152 |
Target: 5'- aGGggG-AGAGAAaccgccGGCCGGGcCGGCGg -3' miRNA: 3'- gCCaaCgUCUUUU------UCGGUCUuGCCGC- -5' |
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11988 | 5' | -50.3 | NC_003278.1 | + | 31198 | 0.67 | 0.791475 |
Target: 5'- uGGgcgccagGCGGGuguuuguccgcuGGGCCAGGGCGGCc -3' miRNA: 3'- gCCaa-----CGUCUuu----------UUCGGUCUUGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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