miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11989 3' -58.3 NC_003278.1 + 30331 0.7 0.283377
Target:  5'- gGAgCGCCAGgaCGcCGucaACGCCGACGc -3'
miRNA:   3'- gCUgGCGGUCgaGCuGC---UGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 22019 0.72 0.197172
Target:  5'- cCGGCgCGCCAGUUCGuCGgucGCGgCGACGa -3'
miRNA:   3'- -GCUG-GCGGUCGAGCuGC---UGUgGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 5793 0.71 0.219168
Target:  5'- aGACCaCCGGCaaggugguagUCGgcaACGGCGCCGACGc -3'
miRNA:   3'- gCUGGcGGUCG----------AGC---UGCUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 4703 0.71 0.219168
Target:  5'- uCGAUC-CCaAGUUCGcCGACACCGGCa -3'
miRNA:   3'- -GCUGGcGG-UCGAGCuGCUGUGGCUGc -5'
11989 3' -58.3 NC_003278.1 + 2432 0.71 0.230932
Target:  5'- uGGCUGCUGGCggCGGUGGCugCGACGu -3'
miRNA:   3'- gCUGGCGGUCGa-GCUGCUGugGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 18896 0.71 0.230932
Target:  5'- uCGACCuGCUgcAGUUCGAUGugGCCG-CGa -3'
miRNA:   3'- -GCUGG-CGG--UCGAGCUGCugUGGCuGC- -5'
11989 3' -58.3 NC_003278.1 + 19739 0.71 0.230932
Target:  5'- -cGCUGCCGcGCUgGcCGGCACCGGCa -3'
miRNA:   3'- gcUGGCGGU-CGAgCuGCUGUGGCUGc -5'
11989 3' -58.3 NC_003278.1 + 9016 0.71 0.249573
Target:  5'- gGGCgGCUAuGC-CGGCGGCACCGcCGa -3'
miRNA:   3'- gCUGgCGGU-CGaGCUGCUGUGGCuGC- -5'
11989 3' -58.3 NC_003278.1 + 14402 0.7 0.256057
Target:  5'- aGAUCGgC--CUCGAgGACGCCGACGg -3'
miRNA:   3'- gCUGGCgGucGAGCUgCUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 20257 0.72 0.196648
Target:  5'- -cACCGCCAcggcccuGCUCGGCaACGCUGGCGu -3'
miRNA:   3'- gcUGGCGGU-------CGAGCUGcUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 32276 0.72 0.191983
Target:  5'- uCGGCCGCaugccgcuGCcCGGCGAUAUCGACGc -3'
miRNA:   3'- -GCUGGCGgu------CGaGCUGCUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 14132 0.73 0.177128
Target:  5'- aCGGCgGCCuGCUCacCGACAUCGGCGc -3'
miRNA:   3'- -GCUGgCGGuCGAGcuGCUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 13972 0.8 0.052587
Target:  5'- cCGAgCGCCuGCUCGACGACgugcgcccagucaGCCGACa -3'
miRNA:   3'- -GCUgGCGGuCGAGCUGCUG-------------UGGCUGc -5'
11989 3' -58.3 NC_003278.1 + 23408 0.8 0.057523
Target:  5'- gGACCugGUCAGCgaccuggcCGACGACACCGGCGg -3'
miRNA:   3'- gCUGG--CGGUCGa-------GCUGCUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 8758 0.79 0.068383
Target:  5'- uGGCCGCC--CUCGGCGGCGCUGACu -3'
miRNA:   3'- gCUGGCGGucGAGCUGCUGUGGCUGc -5'
11989 3' -58.3 NC_003278.1 + 18436 0.77 0.090993
Target:  5'- --uUCGCCGGCUCauuccagcaaGACGAUACCGGCGa -3'
miRNA:   3'- gcuGGCGGUCGAG----------CUGCUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 29233 0.75 0.11726
Target:  5'- aGAagCGCCuGCUCGGCGugGCCGcCGg -3'
miRNA:   3'- gCUg-GCGGuCGAGCUGCugUGGCuGC- -5'
11989 3' -58.3 NC_003278.1 + 21351 0.75 0.131077
Target:  5'- -cGCCGuCCAGCgcgUCGGCGGCGCCG-CGa -3'
miRNA:   3'- gcUGGC-GGUCG---AGCUGCUGUGGCuGC- -5'
11989 3' -58.3 NC_003278.1 + 10404 0.73 0.172408
Target:  5'- aGGCCGUCAuGCUCGA-GACGCCG-Ca -3'
miRNA:   3'- gCUGGCGGU-CGAGCUgCUGUGGCuGc -5'
11989 3' -58.3 NC_003278.1 + 9060 0.73 0.172408
Target:  5'- aCGcUCGCCAGaUCGACGAUACCGcCGc -3'
miRNA:   3'- -GCuGGCGGUCgAGCUGCUGUGGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.