miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11989 3' -58.3 NC_003278.1 + 5056 0.67 0.43419
Target:  5'- gCGGCUGU--GCUCGGCGAuCGCuuCGACGg -3'
miRNA:   3'- -GCUGGCGguCGAGCUGCU-GUG--GCUGC- -5'
11989 3' -58.3 NC_003278.1 + 27960 0.67 0.424657
Target:  5'- gGACCGCgAGCUCa---AgGCCGACGu -3'
miRNA:   3'- gCUGGCGgUCGAGcugcUgUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 10365 0.67 0.424657
Target:  5'- gCGAgCUGCUGGCcgaGugGACGCCGcCGa -3'
miRNA:   3'- -GCU-GGCGGUCGag-CugCUGUGGCuGC- -5'
11989 3' -58.3 NC_003278.1 + 3421 0.67 0.424657
Target:  5'- uCGACgC-CCAGUUCGAUGGCGCaugaGGCc -3'
miRNA:   3'- -GCUG-GcGGUCGAGCUGCUGUGg---CUGc -5'
11989 3' -58.3 NC_003278.1 + 3171 0.67 0.424657
Target:  5'- uGAUgUGCCAGUUCGuCGACGaCGGCGc -3'
miRNA:   3'- gCUG-GCGGUCGAGCuGCUGUgGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 21726 0.67 0.424657
Target:  5'- --cCCgGUCAGCUCGGCGcCAgCGGCa -3'
miRNA:   3'- gcuGG-CGGUCGAGCUGCuGUgGCUGc -5'
11989 3' -58.3 NC_003278.1 + 20044 0.67 0.424657
Target:  5'- -aGCCGCgGGCgacauggaccUCGGCGACACUgcuGACa -3'
miRNA:   3'- gcUGGCGgUCG----------AGCUGCUGUGG---CUGc -5'
11989 3' -58.3 NC_003278.1 + 33046 0.67 0.418998
Target:  5'- uCGACCGUUgucgugccgcgcacuGGC-CGACaccGCGCCGGCGg -3'
miRNA:   3'- -GCUGGCGG---------------UCGaGCUGc--UGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 7844 0.67 0.41525
Target:  5'- gGACCGCC---UCGGucACGCCGGCGg -3'
miRNA:   3'- gCUGGCGGucgAGCUgcUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 31861 0.67 0.405972
Target:  5'- cCGcGCCGCCGGCg----GGCGCCGACc -3'
miRNA:   3'- -GC-UGGCGGUCGagcugCUGUGGCUGc -5'
11989 3' -58.3 NC_003278.1 + 32307 0.67 0.405972
Target:  5'- -nGCCGCCGGCcCGAUG-CACCG-UGu -3'
miRNA:   3'- gcUGGCGGUCGaGCUGCuGUGGCuGC- -5'
11989 3' -58.3 NC_003278.1 + 22969 0.67 0.405972
Target:  5'- aGACUGCCAGCggccUGGCGcUGCCGcACa -3'
miRNA:   3'- gCUGGCGGUCGa---GCUGCuGUGGC-UGc -5'
11989 3' -58.3 NC_003278.1 + 30399 0.67 0.405972
Target:  5'- gGGCgCGUCGGCgUUGACGGCGucCUGGCGc -3'
miRNA:   3'- gCUG-GCGGUCG-AGCUGCUGU--GGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 6250 0.67 0.405972
Target:  5'- aGGCCGUagucCUCGACGACGuaGGCGu -3'
miRNA:   3'- gCUGGCGguc-GAGCUGCUGUggCUGC- -5'
11989 3' -58.3 NC_003278.1 + 5471 0.67 0.405972
Target:  5'- cCGAucuucUCGCCcugcAGCUCGuCGACGCCGuagACGu -3'
miRNA:   3'- -GCU-----GGCGG----UCGAGCuGCUGUGGC---UGC- -5'
11989 3' -58.3 NC_003278.1 + 22064 0.67 0.396826
Target:  5'- uGGCgCGCCGGCUg---GGCACCGAUGc -3'
miRNA:   3'- gCUG-GCGGUCGAgcugCUGUGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 30954 0.67 0.387813
Target:  5'- aGGCCGCgCAGCUCGGugagguCGAaGCgGugGg -3'
miRNA:   3'- gCUGGCG-GUCGAGCU------GCUgUGgCugC- -5'
11989 3' -58.3 NC_003278.1 + 16 0.67 0.387813
Target:  5'- aCGACUGCgCGcGC-CGGCGAaugaGCCGAUGc -3'
miRNA:   3'- -GCUGGCG-GU-CGaGCUGCUg---UGGCUGC- -5'
11989 3' -58.3 NC_003278.1 + 20579 0.68 0.378935
Target:  5'- uGGCCGCC--CUCGACGGCgcgcaucaggguGCCGAa- -3'
miRNA:   3'- gCUGGCGGucGAGCUGCUG------------UGGCUgc -5'
11989 3' -58.3 NC_003278.1 + 8813 0.68 0.370195
Target:  5'- -cGCCGCCggAGCUCGccuCGACcugccGCUGGCGa -3'
miRNA:   3'- gcUGGCGG--UCGAGCu--GCUG-----UGGCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.