miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11990 3' -57.6 NC_003278.1 + 17162 0.66 0.444566
Target:  5'- uGCCGAUG-GCAGcCUGCaCGUUGGUg -3'
miRNA:   3'- gUGGUUGCaCGUCcGACG-GUAGCCGu -5'
11990 3' -57.6 NC_003278.1 + 14260 0.66 0.444566
Target:  5'- uCACCGAUGagcauauggGUGGGCUGCCAcuucuuccCGGCc -3'
miRNA:   3'- -GUGGUUGCa--------CGUCCGACGGUa-------GCCGu -5'
11990 3' -57.6 NC_003278.1 + 9152 0.66 0.434567
Target:  5'- -gUCAGCGUGCAGGCcuucGCCgaGUCcauggGGCGu -3'
miRNA:   3'- guGGUUGCACGUCCGa---CGG--UAG-----CCGU- -5'
11990 3' -57.6 NC_003278.1 + 21990 0.66 0.424699
Target:  5'- gGCCAGCGUguGCAGGCUGaagacgaacaucCCGagGGaCAg -3'
miRNA:   3'- gUGGUUGCA--CGUCCGAC------------GGUagCC-GU- -5'
11990 3' -57.6 NC_003278.1 + 22361 0.66 0.42372
Target:  5'- uCGCCcGCGUGaCGGGCUaccugaccagcGCCGUCGaccaguuGCAg -3'
miRNA:   3'- -GUGGuUGCAC-GUCCGA-----------CGGUAGC-------CGU- -5'
11990 3' -57.6 NC_003278.1 + 17329 0.66 0.414967
Target:  5'- gGCCuuCaUGCcGGUguacuUGCCAUCGGCGc -3'
miRNA:   3'- gUGGuuGcACGuCCG-----ACGGUAGCCGU- -5'
11990 3' -57.6 NC_003278.1 + 6081 0.66 0.414967
Target:  5'- cCACCGGCG-GCAGGCcGCCcaugcgcuUCuGCGa -3'
miRNA:   3'- -GUGGUUGCaCGUCCGaCGGu-------AGcCGU- -5'
11990 3' -57.6 NC_003278.1 + 22938 0.66 0.405372
Target:  5'- uCGCCcaGGCGUgucaGCAGGUUGgCGUCGGa- -3'
miRNA:   3'- -GUGG--UUGCA----CGUCCGACgGUAGCCgu -5'
11990 3' -57.6 NC_003278.1 + 9667 0.66 0.405372
Target:  5'- gGCCAGCGccuggcGCAGcuGCUGCCgcuguuggucagGUCGGCc -3'
miRNA:   3'- gUGGUUGCa-----CGUC--CGACGG------------UAGCCGu -5'
11990 3' -57.6 NC_003278.1 + 8881 0.67 0.368426
Target:  5'- uCGCCAGCG-GCAGGUcgagGCgAgcucCGGCGg -3'
miRNA:   3'- -GUGGUUGCaCGUCCGa---CGgUa---GCCGU- -5'
11990 3' -57.6 NC_003278.1 + 13125 0.67 0.368426
Target:  5'- cCGCCGACGgucGCGucGGCgaUGCC-UCGGCc -3'
miRNA:   3'- -GUGGUUGCa--CGU--CCG--ACGGuAGCCGu -5'
11990 3' -57.6 NC_003278.1 + 29424 0.67 0.359558
Target:  5'- uCGCCcagAACGUaGCAGGCaUGCUccCGGCu -3'
miRNA:   3'- -GUGG---UUGCA-CGUCCG-ACGGuaGCCGu -5'
11990 3' -57.6 NC_003278.1 + 22383 0.67 0.359558
Target:  5'- uCACaggauGCGUcucaGCAGGUUGCCggCGGUAc -3'
miRNA:   3'- -GUGgu---UGCA----CGUCCGACGGuaGCCGU- -5'
11990 3' -57.6 NC_003278.1 + 3558 0.67 0.350839
Target:  5'- gCACCAACGcGCggacugcccaGGGCUaCCA-CGGCAa -3'
miRNA:   3'- -GUGGUUGCaCG----------UCCGAcGGUaGCCGU- -5'
11990 3' -57.6 NC_003278.1 + 29804 0.68 0.342272
Target:  5'- aGCCAGCGgcGCAGGCccGCC-UUGGUc -3'
miRNA:   3'- gUGGUUGCa-CGUCCGa-CGGuAGCCGu -5'
11990 3' -57.6 NC_003278.1 + 19788 0.68 0.342272
Target:  5'- gGCCAGCGcgGCAGcGCucuggaUGCCG-CGGCu -3'
miRNA:   3'- gUGGUUGCa-CGUC-CG------ACGGUaGCCGu -5'
11990 3' -57.6 NC_003278.1 + 11855 0.68 0.332192
Target:  5'- gACCGGCGaccugcugaccgGCuGGCUGCCuUgGGCAu -3'
miRNA:   3'- gUGGUUGCa-----------CGuCCGACGGuAgCCGU- -5'
11990 3' -57.6 NC_003278.1 + 29873 0.68 0.309528
Target:  5'- cCGCCGGCGcgGCuguugucGCUGCgGUCGGCc -3'
miRNA:   3'- -GUGGUUGCa-CGuc-----CGACGgUAGCCGu -5'
11990 3' -57.6 NC_003278.1 + 22822 0.69 0.286574
Target:  5'- gCGCCGGCGcugGCGGGcCUGCCgAUCcuGCAg -3'
miRNA:   3'- -GUGGUUGCa--CGUCC-GACGG-UAGc-CGU- -5'
11990 3' -57.6 NC_003278.1 + 4781 0.69 0.286574
Target:  5'- gGCCGACcaaGUAGGCcuUGCCGgugUCGGCGa -3'
miRNA:   3'- gUGGUUGca-CGUCCG--ACGGU---AGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.