Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11990 | 3' | -57.6 | NC_003278.1 | + | 3558 | 0.67 | 0.350839 |
Target: 5'- gCACCAACGcGCggacugcccaGGGCUaCCA-CGGCAa -3' miRNA: 3'- -GUGGUUGCaCG----------UCCGAcGGUaGCCGU- -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 4781 | 0.69 | 0.286574 |
Target: 5'- gGCCGACcaaGUAGGCcuUGCCGgugUCGGCGa -3' miRNA: 3'- gUGGUUGca-CGUCCG--ACGGU---AGCCGU- -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 6081 | 0.66 | 0.414967 |
Target: 5'- cCACCGGCG-GCAGGCcGCCcaugcgcuUCuGCGa -3' miRNA: 3'- -GUGGUUGCaCGUCCGaCGGu-------AGcCGU- -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 7429 | 0.71 | 0.196964 |
Target: 5'- gUACCAGCG-GUAGcGCUcgGCCAcuUCGGCGg -3' miRNA: 3'- -GUGGUUGCaCGUC-CGA--CGGU--AGCCGU- -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 8796 | 0.71 | 0.196964 |
Target: 5'- gGCCAGgGUcuuCGGGCcagcgaUGCCAUCGGCGa -3' miRNA: 3'- gUGGUUgCAc--GUCCG------ACGGUAGCCGU- -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 8881 | 0.67 | 0.368426 |
Target: 5'- uCGCCAGCG-GCAGGUcgagGCgAgcucCGGCGg -3' miRNA: 3'- -GUGGUUGCaCGUCCGa---CGgUa---GCCGU- -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 9152 | 0.66 | 0.434567 |
Target: 5'- -gUCAGCGUGCAGGCcuucGCCgaGUCcauggGGCGu -3' miRNA: 3'- guGGUUGCACGUCCGa---CGG--UAG-----CCGU- -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 9667 | 0.66 | 0.405372 |
Target: 5'- gGCCAGCGccuggcGCAGcuGCUGCCgcuguuggucagGUCGGCc -3' miRNA: 3'- gUGGUUGCa-----CGUC--CGACGG------------UAGCCGu -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 11855 | 0.68 | 0.332192 |
Target: 5'- gACCGGCGaccugcugaccgGCuGGCUGCCuUgGGCAu -3' miRNA: 3'- gUGGUUGCa-----------CGuCCGACGGuAgCCGU- -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 13096 | 0.73 | 0.153149 |
Target: 5'- gCGCCcgcuCGcGCAGGCUGUCGUCGGa- -3' miRNA: 3'- -GUGGuu--GCaCGUCCGACGGUAGCCgu -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 13125 | 0.67 | 0.368426 |
Target: 5'- cCGCCGACGgucGCGucGGCgaUGCC-UCGGCc -3' miRNA: 3'- -GUGGUUGCa--CGU--CCG--ACGGuAGCCGu -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 14260 | 0.66 | 0.444566 |
Target: 5'- uCACCGAUGagcauauggGUGGGCUGCCAcuucuuccCGGCc -3' miRNA: 3'- -GUGGUUGCa--------CGUCCGACGGUa-------GCCGu -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 14814 | 0.7 | 0.231951 |
Target: 5'- -cCCAGCGUGguCGGGUUGCUGcCGGCGg -3' miRNA: 3'- guGGUUGCAC--GUCCGACGGUaGCCGU- -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 17101 | 1.08 | 0.000329 |
Target: 5'- uCACCAACGUGCAGGCUGCCAUCGGCAa -3' miRNA: 3'- -GUGGUUGCACGUCCGACGGUAGCCGU- -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 17162 | 0.66 | 0.444566 |
Target: 5'- uGCCGAUG-GCAGcCUGCaCGUUGGUg -3' miRNA: 3'- gUGGUUGCaCGUCcGACG-GUAGCCGu -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 17329 | 0.66 | 0.414967 |
Target: 5'- gGCCuuCaUGCcGGUguacuUGCCAUCGGCGc -3' miRNA: 3'- gUGGuuGcACGuCCG-----ACGGUAGCCGU- -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 19251 | 0.73 | 0.136666 |
Target: 5'- aCGCgCAGC-UGCAGGUcauucGCCAUCGGCGg -3' miRNA: 3'- -GUG-GUUGcACGUCCGa----CGGUAGCCGU- -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 19788 | 0.68 | 0.342272 |
Target: 5'- gGCCAGCGcgGCAGcGCucuggaUGCCG-CGGCu -3' miRNA: 3'- gUGGUUGCa-CGUC-CG------ACGGUaGCCGu -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 20889 | 0.73 | 0.157542 |
Target: 5'- uGCCGGCGagggugaugGCaAGGCUGCCAaCGGUAg -3' miRNA: 3'- gUGGUUGCa--------CG-UCCGACGGUaGCCGU- -5' |
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11990 | 3' | -57.6 | NC_003278.1 | + | 21990 | 0.66 | 0.424699 |
Target: 5'- gGCCAGCGUguGCAGGCUGaagacgaacaucCCGagGGaCAg -3' miRNA: 3'- gUGGUUGCA--CGUCCGAC------------GGUagCC-GU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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