Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11992 | 5' | -55.9 | NC_003278.1 | + | 6124 | 0.66 | 0.502951 |
|
Target: 5'- --aGGGUGG-UGACcaugAGGCCCuucucggGCACg -3' miRNA: 3'- acaCCCGCCaACUG----UUCGGGua-----CGUG- -5' |
|||||||
| 11992 | 5' | -55.9 | NC_003278.1 | + | 16045 | 0.66 | 0.49215 |
|
Target: 5'- aGUuGGCcgGGUUGAaguugccgGAGuCCCAUGCACg -3' miRNA: 3'- aCAcCCG--CCAACUg-------UUC-GGGUACGUG- -5' |
|||||||
| 11992 | 5' | -55.9 | NC_003278.1 | + | 6077 | 0.67 | 0.429803 |
|
Target: 5'- ---cGGCGGcaGGCc-GCCCAUGCGCu -3' miRNA: 3'- acacCCGCCaaCUGuuCGGGUACGUG- -5' |
|||||||
| 11992 | 5' | -55.9 | NC_003278.1 | + | 8518 | 0.68 | 0.372347 |
|
Target: 5'- gGUGGGCGGUaGAgcaggauuucCAGGCCgCAgauggccauggaUGCGCc -3' miRNA: 3'- aCACCCGCCAaCU----------GUUCGG-GU------------ACGUG- -5' |
|||||||
| 11992 | 5' | -55.9 | NC_003278.1 | + | 27927 | 0.69 | 0.349125 |
|
Target: 5'- gUGUGGGCGGUccucgaggaugcgcuUGccGCGcAGCCCcUGCGg -3' miRNA: 3'- -ACACCCGCCA---------------AC--UGU-UCGGGuACGUg -5' |
|||||||
| 11992 | 5' | -55.9 | NC_003278.1 | + | 17850 | 1.09 | 0.0004 |
|
Target: 5'- aUGUGGGCGGUUGACAAGCCCAUGCACc -3' miRNA: 3'- -ACACCCGCCAACUGUUCGGGUACGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home