miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11993 3' -51.7 NC_003278.1 + 26672 0.66 0.80448
Target:  5'- gAGAaCGCCGGCAGCaaaccgCUCaG-CGACg -3'
miRNA:   3'- -UCUaGUGGCUGUCGaua---GAG-CaGCUG- -5'
11993 3' -51.7 NC_003278.1 + 7515 0.66 0.794283
Target:  5'- cGGAUCGCC--CAGCgcugGUCgcggcgguagUCGUCGAUg -3'
miRNA:   3'- -UCUAGUGGcuGUCGa---UAG----------AGCAGCUG- -5'
11993 3' -51.7 NC_003278.1 + 5042 0.66 0.794283
Target:  5'- cGAUCGCuuCGACGGC---CUCGcCGACc -3'
miRNA:   3'- uCUAGUG--GCUGUCGauaGAGCaGCUG- -5'
11993 3' -51.7 NC_003278.1 + 13186 0.66 0.794283
Target:  5'- aGGcAUCGCCGAC-GCga-C-CGUCGGCg -3'
miRNA:   3'- -UC-UAGUGGCUGuCGauaGaGCAGCUG- -5'
11993 3' -51.7 NC_003278.1 + 20483 0.66 0.762607
Target:  5'- ---aUACCGGCGGUcuUCUUGUUGAUg -3'
miRNA:   3'- ucuaGUGGCUGUCGauAGAGCAGCUG- -5'
11993 3' -51.7 NC_003278.1 + 17245 0.68 0.695581
Target:  5'- cGGUCAUCGGCGGC-GUCagCGcCGAUg -3'
miRNA:   3'- uCUAGUGGCUGUCGaUAGa-GCaGCUG- -5'
11993 3' -51.7 NC_003278.1 + 6678 0.68 0.660959
Target:  5'- cAGAagACCGGCGGCaGUUUCGaccuugCGACc -3'
miRNA:   3'- -UCUagUGGCUGUCGaUAGAGCa-----GCUG- -5'
11993 3' -51.7 NC_003278.1 + 22714 0.7 0.556722
Target:  5'- cGGcgCGCCG-CuguGCUcgGUUUCGUCGACg -3'
miRNA:   3'- -UCuaGUGGCuGu--CGA--UAGAGCAGCUG- -5'
11993 3' -51.7 NC_003278.1 + 12139 0.7 0.556722
Target:  5'- -cAUCAgCGACGGCggcAUCcgcaUCGUCGGCg -3'
miRNA:   3'- ucUAGUgGCUGUCGa--UAG----AGCAGCUG- -5'
11993 3' -51.7 NC_003278.1 + 18556 0.71 0.511701
Target:  5'- aAGAUCACCaccaccuGCAGCUAcuacaagCUCGUCGuCa -3'
miRNA:   3'- -UCUAGUGGc------UGUCGAUa------GAGCAGCuG- -5'
11993 3' -51.7 NC_003278.1 + 18071 1.1 0.001162
Target:  5'- aAGAUCACCGACAGCUAUCUCGUCGACu -3'
miRNA:   3'- -UCUAGUGGCUGUCGAUAGAGCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.