miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11993 5' -58.6 NC_003278.1 + 23231 0.66 0.428622
Target:  5'- cGCGggCGGCGCgCagGGCGCuCUGGCGgUCg -3'
miRNA:   3'- -CGCa-GUUGCG-Ga-CUGCG-GGUCGCgAG- -5'
11993 5' -58.6 NC_003278.1 + 19252 0.66 0.428622
Target:  5'- uGCGUCGcaucAUGCaaGGCagcgacgcgacgGCCCGGgCGCUCa -3'
miRNA:   3'- -CGCAGU----UGCGgaCUG------------CGGGUC-GCGAG- -5'
11993 5' -58.6 NC_003278.1 + 31390 0.66 0.428622
Target:  5'- aCGUCGGCGgCUcgcacuCGCCCAGCGa-- -3'
miRNA:   3'- cGCAGUUGCgGAcu----GCGGGUCGCgag -5'
11993 5' -58.6 NC_003278.1 + 9099 0.66 0.418998
Target:  5'- aGCGUU--CGCCaGGCGCU-GGUGCUCg -3'
miRNA:   3'- -CGCAGuuGCGGaCUGCGGgUCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 12976 0.66 0.409507
Target:  5'- -gGUCAGCGCCcugGGCGCuggCCAGCa--- -3'
miRNA:   3'- cgCAGUUGCGGa--CUGCG---GGUCGcgag -5'
11993 5' -58.6 NC_003278.1 + 10407 0.66 0.409507
Target:  5'- cCGUCAugcucgagACGCCgcagaucaGGCGCCCGGCcaaugGCUg -3'
miRNA:   3'- cGCAGU--------UGCGGa-------CUGCGGGUCG-----CGAg -5'
11993 5' -58.6 NC_003278.1 + 5506 0.66 0.409507
Target:  5'- cGUGUCcGCGCUcGACaaCCAGCGUUa -3'
miRNA:   3'- -CGCAGuUGCGGaCUGcgGGUCGCGAg -5'
11993 5' -58.6 NC_003278.1 + 2707 0.66 0.408565
Target:  5'- --uUCGACGCCggcugGACcgaccugGCCCAGgCGCUg -3'
miRNA:   3'- cgcAGUUGCGGa----CUG-------CGGGUC-GCGAg -5'
11993 5' -58.6 NC_003278.1 + 10493 0.66 0.408565
Target:  5'- gGCuGUCAGCcauugGCCgGGCGCCUgaucugcGGCGuCUCg -3'
miRNA:   3'- -CG-CAGUUG-----CGGaCUGCGGG-------UCGC-GAG- -5'
11993 5' -58.6 NC_003278.1 + 22170 0.66 0.40015
Target:  5'- gGUGUCAGCcaucuGCCgcaGuACGUCCAG-GCUCa -3'
miRNA:   3'- -CGCAGUUG-----CGGa--C-UGCGGGUCgCGAG- -5'
11993 5' -58.6 NC_003278.1 + 21745 0.66 0.390931
Target:  5'- -gGUgAugGCCUG-CGCCgGGgCGCUg -3'
miRNA:   3'- cgCAgUugCGGACuGCGGgUC-GCGAg -5'
11993 5' -58.6 NC_003278.1 + 20274 0.66 0.381852
Target:  5'- uCGgCAACG-CUGGCGUCCAGgGCa- -3'
miRNA:   3'- cGCaGUUGCgGACUGCGGGUCgCGag -5'
11993 5' -58.6 NC_003278.1 + 13556 0.66 0.381852
Target:  5'- aCGcUGACGCUgggggaugagUGAUGCCCAGCuuGCUCc -3'
miRNA:   3'- cGCaGUUGCGG----------ACUGCGGGUCG--CGAG- -5'
11993 5' -58.6 NC_003278.1 + 3302 0.66 0.380951
Target:  5'- uGCGaUCGGCgGCCggcuUGCCCuuguugaAGCGCUCg -3'
miRNA:   3'- -CGC-AGUUG-CGGacu-GCGGG-------UCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 6391 0.67 0.372914
Target:  5'- gGCGUUcGCGCCUuccAUGCCCuGGUGCg- -3'
miRNA:   3'- -CGCAGuUGCGGAc--UGCGGG-UCGCGag -5'
11993 5' -58.6 NC_003278.1 + 30250 0.67 0.372914
Target:  5'- -gGUCGACGCgCUG-CGCCUGGUGgUg -3'
miRNA:   3'- cgCAGUUGCG-GACuGCGGGUCGCgAg -5'
11993 5' -58.6 NC_003278.1 + 1752 0.67 0.372914
Target:  5'- cGCGgucuUCAGCGCCg--UGCgCAGCGCgUCg -3'
miRNA:   3'- -CGC----AGUUGCGGacuGCGgGUCGCG-AG- -5'
11993 5' -58.6 NC_003278.1 + 31089 0.67 0.364119
Target:  5'- aGCGUCGcUGCg----GCCCAGCGCUUg -3'
miRNA:   3'- -CGCAGUuGCGgacugCGGGUCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 34331 0.67 0.364119
Target:  5'- -gGUcCAGCuaCUGGC-CCCGGCGCUg -3'
miRNA:   3'- cgCA-GUUGcgGACUGcGGGUCGCGAg -5'
11993 5' -58.6 NC_003278.1 + 32005 0.67 0.35547
Target:  5'- gGCGaggCAugGgCUGAUGaCCCGGUGC-Cg -3'
miRNA:   3'- -CGCa--GUugCgGACUGC-GGGUCGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.