miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11993 5' -58.6 NC_003278.1 + 1342 0.69 0.243325
Target:  5'- uUGUCAgcaaccuguaACGCCUGGCGCaacacgCCAaGCGUUCu -3'
miRNA:   3'- cGCAGU----------UGCGGACUGCG------GGU-CGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 1752 0.67 0.372914
Target:  5'- cGCGgucuUCAGCGCCg--UGCgCAGCGCgUCg -3'
miRNA:   3'- -CGC----AGUUGCGGacuGCGgGUCGCG-AG- -5'
11993 5' -58.6 NC_003278.1 + 2707 0.66 0.408565
Target:  5'- --uUCGACGCCggcugGACcgaccugGCCCAGgCGCUg -3'
miRNA:   3'- cgcAGUUGCGGa----CUG-------CGGGUC-GCGAg -5'
11993 5' -58.6 NC_003278.1 + 2809 0.68 0.31442
Target:  5'- gGUGUCGACGCCgauguaggUGAC-CCagUAGCGCUg -3'
miRNA:   3'- -CGCAGUUGCGG--------ACUGcGG--GUCGCGAg -5'
11993 5' -58.6 NC_003278.1 + 3302 0.66 0.380951
Target:  5'- uGCGaUCGGCgGCCggcuUGCCCuuguugaAGCGCUCg -3'
miRNA:   3'- -CGC-AGUUG-CGGacu-GCGGG-------UCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 3930 0.68 0.306653
Target:  5'- ---gUAGCGCUggauccGCGCCUGGCGCUCa -3'
miRNA:   3'- cgcaGUUGCGGac----UGCGGGUCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 3995 0.69 0.25639
Target:  5'- aGCuUgAGCGCCaGGCGCggauCCAGCGCUa -3'
miRNA:   3'- -CGcAgUUGCGGaCUGCG----GGUCGCGAg -5'
11993 5' -58.6 NC_003278.1 + 5506 0.66 0.409507
Target:  5'- cGUGUCcGCGCUcGACaaCCAGCGUUa -3'
miRNA:   3'- -CGCAGuUGCGGaCUGcgGGUCGCGAg -5'
11993 5' -58.6 NC_003278.1 + 5822 0.73 0.137587
Target:  5'- gGCGcCGACGCCgacuacaagaaccucGACGCCCuGGUGUUCg -3'
miRNA:   3'- -CGCaGUUGCGGa--------------CUGCGGG-UCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 6391 0.67 0.372914
Target:  5'- gGCGUUcGCGCCUuccAUGCCCuGGUGCg- -3'
miRNA:   3'- -CGCAGuUGCGGAc--UGCGGG-UCGCGag -5'
11993 5' -58.6 NC_003278.1 + 6636 0.7 0.237002
Target:  5'- uGCGUCAuCGCCgaagaGAuCGCCgAggccGCGCUCa -3'
miRNA:   3'- -CGCAGUuGCGGa----CU-GCGGgU----CGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 7221 0.69 0.243325
Target:  5'- aGCGUCAACcgcgagcugcggGCCUGGCGCCUugagaagaucgcGGCcgGCUa -3'
miRNA:   3'- -CGCAGUUG------------CGGACUGCGGG------------UCG--CGAg -5'
11993 5' -58.6 NC_003278.1 + 7538 0.77 0.066658
Target:  5'- uGCGggGACGCUUGAgaaagucgcggauCGCCCAGCGCUg -3'
miRNA:   3'- -CGCagUUGCGGACU-------------GCGGGUCGCGAg -5'
11993 5' -58.6 NC_003278.1 + 8358 0.69 0.243325
Target:  5'- cGCG-CuGCGCCUGGucUGCuaCCAGCGCUg -3'
miRNA:   3'- -CGCaGuUGCGGACU--GCG--GGUCGCGAg -5'
11993 5' -58.6 NC_003278.1 + 8673 0.67 0.338608
Target:  5'- --uUCGGCGCCgccaccgagGACGCggugcgugccuuCCAGCGUUCg -3'
miRNA:   3'- cgcAGUUGCGGa--------CUGCG------------GGUCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 8818 0.7 0.237002
Target:  5'- aGCaGUCAGCGCCgccgagGGCGgCCAGgGUcuUCg -3'
miRNA:   3'- -CG-CAGUUGCGGa-----CUGCgGGUCgCG--AG- -5'
11993 5' -58.6 NC_003278.1 + 9099 0.66 0.418998
Target:  5'- aGCGUU--CGCCaGGCGCU-GGUGCUCg -3'
miRNA:   3'- -CGCAGuuGCGGaCUGCGGgUCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 9400 0.68 0.31442
Target:  5'- uUGUaCAGCGCCgcccUGCUCGGUGCUCu -3'
miRNA:   3'- cGCA-GUUGCGGacu-GCGGGUCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 9635 0.72 0.171426
Target:  5'- -gGUCAGgucgGCCUGG-GCCUGGCGCUCg -3'
miRNA:   3'- cgCAGUUg---CGGACUgCGGGUCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 9674 0.67 0.338608
Target:  5'- cGCGgauggcCAGCGCCUGGCGC--AGCuGCUg -3'
miRNA:   3'- -CGCa-----GUUGCGGACUGCGggUCG-CGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.