miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11993 5' -58.6 NC_003278.1 + 32005 0.67 0.35547
Target:  5'- gGCGaggCAugGgCUGAUGaCCCGGUGC-Cg -3'
miRNA:   3'- -CGCa--GUugCgGACUGC-GGGUCGCGaG- -5'
11993 5' -58.6 NC_003278.1 + 19999 0.69 0.25639
Target:  5'- cGCGaagcagauccUCGGCGCC--AUGCCCGGCauGCUCa -3'
miRNA:   3'- -CGC----------AGUUGCGGacUGCGGGUCG--CGAG- -5'
11993 5' -58.6 NC_003278.1 + 14983 0.69 0.277058
Target:  5'- aCGUCAACGgaguCCUGACGCuggccaacuCCGGCGUc- -3'
miRNA:   3'- cGCAGUUGC----GGACUGCG---------GGUCGCGag -5'
11993 5' -58.6 NC_003278.1 + 14912 0.68 0.291562
Target:  5'- gGCuugCAGCGCCcaucACGCUCAGCGCg- -3'
miRNA:   3'- -CGca-GUUGCGGac--UGCGGGUCGCGag -5'
11993 5' -58.6 NC_003278.1 + 30345 0.68 0.299034
Target:  5'- cCGUCAACGCCgacGCGCCCgagguGGCcgaGUUCu -3'
miRNA:   3'- cGCAGUUGCGGac-UGCGGG-----UCG---CGAG- -5'
11993 5' -58.6 NC_003278.1 + 3930 0.68 0.306653
Target:  5'- ---gUAGCGCUggauccGCGCCUGGCGCUCa -3'
miRNA:   3'- cgcaGUUGCGGac----UGCGGGUCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 9400 0.68 0.31442
Target:  5'- uUGUaCAGCGCCgcccUGCUCGGUGCUCu -3'
miRNA:   3'- cGCA-GUUGCGGacu-GCGGGUCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 2809 0.68 0.31442
Target:  5'- gGUGUCGACGCCgauguaggUGAC-CCagUAGCGCUg -3'
miRNA:   3'- -CGCAGUUGCGG--------ACUGcGG--GUCGCGAg -5'
11993 5' -58.6 NC_003278.1 + 8673 0.67 0.338608
Target:  5'- --uUCGGCGCCgccaccgagGACGCggugcgugccuuCCAGCGUUCg -3'
miRNA:   3'- cgcAGUUGCGGa--------CUGCG------------GGUCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 13416 0.69 0.25639
Target:  5'- aGCGUCGACGCCUGGgcauggaagUGUCCgaaucggcGGUGCa- -3'
miRNA:   3'- -CGCAGUUGCGGACU---------GCGGG--------UCGCGag -5'
11993 5' -58.6 NC_003278.1 + 27449 0.69 0.25639
Target:  5'- --uUCAugGCCgaacaacuCGCCCAGCGCg- -3'
miRNA:   3'- cgcAGUugCGGacu-----GCGGGUCGCGag -5'
11993 5' -58.6 NC_003278.1 + 19305 0.69 0.249787
Target:  5'- cGCG--AGCGCCUGAagcaGCUCAaCGCUCa -3'
miRNA:   3'- -CGCagUUGCGGACUg---CGGGUcGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 31137 0.8 0.044264
Target:  5'- aGCGgaCAAacaccCGCCUGGCGCCCAGCGCc- -3'
miRNA:   3'- -CGCa-GUU-----GCGGACUGCGGGUCGCGag -5'
11993 5' -58.6 NC_003278.1 + 30795 0.75 0.100348
Target:  5'- cGCGcugaAACGCCUGcugccgauCGCCCAGCGCg- -3'
miRNA:   3'- -CGCag--UUGCGGACu-------GCGGGUCGCGag -5'
11993 5' -58.6 NC_003278.1 + 5822 0.73 0.137587
Target:  5'- gGCGcCGACGCCgacuacaagaaccucGACGCCCuGGUGUUCg -3'
miRNA:   3'- -CGCaGUUGCGGa--------------CUGCGGG-UCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 21652 0.72 0.166763
Target:  5'- aGCGcCGGCGCCaucGGUGCCCuGGUGCUCg -3'
miRNA:   3'- -CGCaGUUGCGGa--CUGCGGG-UCGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 23215 0.71 0.18612
Target:  5'- aGCGUggCAGCGCC--ACGCUCAgcuacGCGCUCg -3'
miRNA:   3'- -CGCA--GUUGCGGacUGCGGGU-----CGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 6636 0.7 0.237002
Target:  5'- uGCGUCAuCGCCgaagaGAuCGCCgAggccGCGCUCa -3'
miRNA:   3'- -CGCAGUuGCGGa----CU-GCGGgU----CGCGAG- -5'
11993 5' -58.6 NC_003278.1 + 7221 0.69 0.243325
Target:  5'- aGCGUCAACcgcgagcugcggGCCUGGCGCCUugagaagaucgcGGCcgGCUa -3'
miRNA:   3'- -CGCAGUUG------------CGGACUGCGGG------------UCG--CGAg -5'
11993 5' -58.6 NC_003278.1 + 8358 0.69 0.243325
Target:  5'- cGCG-CuGCGCCUGGucUGCuaCCAGCGCUg -3'
miRNA:   3'- -CGCaGuUGCGGACU--GCG--GGUCGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.