miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11994 3' -44.9 NC_003278.1 + 4802 0.66 0.993327
Target:  5'- cCAAGAACggGAcCCUCgcCAGCcGCa -3'
miRNA:   3'- aGUUCUUGuaCUuGGAGaaGUUGcUG- -5'
11994 3' -44.9 NC_003278.1 + 32241 0.66 0.990776
Target:  5'- -gGAGAAgAaGAGCCUgCgcgccgUCGGCGACa -3'
miRNA:   3'- agUUCUUgUaCUUGGA-Ga-----AGUUGCUG- -5'
11994 3' -44.9 NC_003278.1 + 12446 0.66 0.989241
Target:  5'- --cGGAGCugaucGAugCUCcgUUCAACGACa -3'
miRNA:   3'- aguUCUUGua---CUugGAG--AAGUUGCUG- -5'
11994 3' -44.9 NC_003278.1 + 29176 0.66 0.988744
Target:  5'- aCGAGAGCGUGAagaACaC-CUUCAccagugcccaggucGCGGCg -3'
miRNA:   3'- aGUUCUUGUACU---UG-GaGAAGU--------------UGCUG- -5'
11994 3' -44.9 NC_003278.1 + 21251 0.67 0.983426
Target:  5'- aCcuGGGCAUcGACCUgccggcgcgCUUCAGCGACu -3'
miRNA:   3'- aGuuCUUGUAcUUGGA---------GAAGUUGCUG- -5'
11994 3' -44.9 NC_003278.1 + 18610 0.68 0.971992
Target:  5'- aUCGAGAucgaccuGC-UGAACUUCgucgagaaggUCAACGGCa -3'
miRNA:   3'- -AGUUCU-------UGuACUUGGAGa---------AGUUGCUG- -5'
11994 3' -44.9 NC_003278.1 + 6364 0.68 0.965105
Target:  5'- --cGGGGCAgUGGccgccGCCUCUUgAGCGGCg -3'
miRNA:   3'- aguUCUUGU-ACU-----UGGAGAAgUUGCUG- -5'
11994 3' -44.9 NC_003278.1 + 30977 0.69 0.941537
Target:  5'- aCAGGAaguGCAUGAguACUUCgaaGACGGCg -3'
miRNA:   3'- aGUUCU---UGUACU--UGGAGaagUUGCUG- -5'
11994 3' -44.9 NC_003278.1 + 2728 0.7 0.916614
Target:  5'- aUCAAGAACGgccGCCUCgaaUUCGACGcCg -3'
miRNA:   3'- -AGUUCUUGUacuUGGAG---AAGUUGCuG- -5'
11994 3' -44.9 NC_003278.1 + 8353 0.71 0.909524
Target:  5'- gUCAuGAGCAUGucagcGACCUCcUCGgauGCGGCg -3'
miRNA:   3'- -AGUuCUUGUAC-----UUGGAGaAGU---UGCUG- -5'
11994 3' -44.9 NC_003278.1 + 28978 0.72 0.841071
Target:  5'- aCAAGGccauGCA-GAGCCUCgaggaCAGCGACa -3'
miRNA:   3'- aGUUCU----UGUaCUUGGAGaa---GUUGCUG- -5'
11994 3' -44.9 NC_003278.1 + 1674 0.74 0.766797
Target:  5'- aUCAAGAACAUcAGCCg---CGACGACc -3'
miRNA:   3'- -AGUUCUUGUAcUUGGagaaGUUGCUG- -5'
11994 3' -44.9 NC_003278.1 + 20048 0.74 0.755374
Target:  5'- gCGGGcGACAUGGACCUCg---GCGACa -3'
miRNA:   3'- aGUUC-UUGUACUUGGAGaaguUGCUG- -5'
11994 3' -44.9 NC_003278.1 + 28147 0.75 0.708274
Target:  5'- aUCAAGGaaaucuACccGGAgCUCUUCGACGACu -3'
miRNA:   3'- -AGUUCU------UGuaCUUgGAGAAGUUGCUG- -5'
11994 3' -44.9 NC_003278.1 + 10457 0.76 0.64619
Target:  5'- gUCucGAGCAUGAcgGCCUCggugggcUUCGGCGGCg -3'
miRNA:   3'- -AGuuCUUGUACU--UGGAG-------AAGUUGCUG- -5'
11994 3' -44.9 NC_003278.1 + 18196 1.13 0.004067
Target:  5'- cUCAAGAACAUGAACCUCUUCAACGACg -3'
miRNA:   3'- -AGUUCUUGUACUUGGAGAAGUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.