miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11995 5' -54.8 NC_003278.1 + 13148 0.66 0.66542
Target:  5'- gCC-UCGGCCgucag-CCCaucgCCUGCCg -3'
miRNA:   3'- -GGuAGCCGGacauuaGGGaa--GGGCGG- -5'
11995 5' -54.8 NC_003278.1 + 21207 0.66 0.66542
Target:  5'- cCCAcUCGGCCUGaUGuaccgCgCCUUCgCCGgCg -3'
miRNA:   3'- -GGU-AGCCGGAC-AUua---G-GGAAG-GGCgG- -5'
11995 5' -54.8 NC_003278.1 + 16263 0.66 0.66542
Target:  5'- ---aCGGCC----GUCCUgccaUUCCCGCCu -3'
miRNA:   3'- gguaGCCGGacauUAGGG----AAGGGCGG- -5'
11995 5' -54.8 NC_003278.1 + 9541 0.66 0.66542
Target:  5'- aCCAUcaCGGCCcucgAGgccgCCCuUUCCCGCg -3'
miRNA:   3'- -GGUA--GCCGGaca-UUa---GGG-AAGGGCGg -5'
11995 5' -54.8 NC_003278.1 + 22974 0.66 0.636139
Target:  5'- gCCAgCGGCCUGgcGcugccgcacaucaaCCUcaCCCGCCa -3'
miRNA:   3'- -GGUaGCCGGACauUa-------------GGGaaGGGCGG- -5'
11995 5' -54.8 NC_003278.1 + 9630 0.66 0.631628
Target:  5'- -gGUCGGCCUGgg--CCUggcgCUCGCg -3'
miRNA:   3'- ggUAGCCGGACauuaGGGaa--GGGCGg -5'
11995 5' -54.8 NC_003278.1 + 9849 0.66 0.631628
Target:  5'- gUAUCGGCCUGg---CCUgggCCgagugCGCCg -3'
miRNA:   3'- gGUAGCCGGACauuaGGGaa-GG-----GCGG- -5'
11995 5' -54.8 NC_003278.1 + 13349 0.66 0.631628
Target:  5'- aCCAUCGGCCcGgaGUCCgagccgauaCUcgaUgCCGCCc -3'
miRNA:   3'- -GGUAGCCGGaCauUAGG---------GA---AgGGCGG- -5'
11995 5' -54.8 NC_003278.1 + 3032 0.66 0.62035
Target:  5'- ---aCGGCUUGUAGUCCUccgaccacaggUCCCaGCUa -3'
miRNA:   3'- gguaGCCGGACAUUAGGGa----------AGGG-CGG- -5'
11995 5' -54.8 NC_003278.1 + 3974 0.66 0.62035
Target:  5'- -gGUCGauuucCUUGUAGUCCCgccggUCuuGCCg -3'
miRNA:   3'- ggUAGCc----GGACAUUAGGGa----AGggCGG- -5'
11995 5' -54.8 NC_003278.1 + 11988 0.66 0.609083
Target:  5'- uCCugacCGGCUUGUucagugaCCUgaUCCCGCCc -3'
miRNA:   3'- -GGua--GCCGGACAuuag---GGA--AGGGCGG- -5'
11995 5' -54.8 NC_003278.1 + 31169 0.67 0.553252
Target:  5'- gCCAgggCGGCCUGgaccauguUCUCggCCCGUUc -3'
miRNA:   3'- -GGUa--GCCGGACauu-----AGGGaaGGGCGG- -5'
11995 5' -54.8 NC_003278.1 + 2863 0.68 0.531319
Target:  5'- --cUCGGCCUGUucggcgaagUCCUUgCCGCg -3'
miRNA:   3'- gguAGCCGGACAuua------GGGAAgGGCGg -5'
11995 5' -54.8 NC_003278.1 + 5870 0.68 0.52047
Target:  5'- gUCAgCaGCCUGaucGAUCCCUggcaCCGCCg -3'
miRNA:   3'- -GGUaGcCGGACa--UUAGGGAag--GGCGG- -5'
11995 5' -54.8 NC_003278.1 + 8098 0.68 0.488477
Target:  5'- -gGUCGcGCCUGcuGUCgCUgaUCCUGCCg -3'
miRNA:   3'- ggUAGC-CGGACauUAGgGA--AGGGCGG- -5'
11995 5' -54.8 NC_003278.1 + 22906 0.69 0.482188
Target:  5'- cUCGUUGGCCUG--GUCCagCUgcaggaucggcaggCCCGCCa -3'
miRNA:   3'- -GGUAGCCGGACauUAGG--GAa-------------GGGCGG- -5'
11995 5' -54.8 NC_003278.1 + 20180 0.69 0.467669
Target:  5'- aCGUCGGCCaccUGGUCCauuUUCuCUGCCg -3'
miRNA:   3'- gGUAGCCGGac-AUUAGGg--AAG-GGCGG- -5'
11995 5' -54.8 NC_003278.1 + 10237 0.69 0.437341
Target:  5'- -uGUCGGCCUcgaagGUGAUgCCgUCCUGCa -3'
miRNA:   3'- ggUAGCCGGA-----CAUUAgGGaAGGGCGg -5'
11995 5' -54.8 NC_003278.1 + 8500 0.7 0.402488
Target:  5'- gCCAUCGucgccacccugcuguGCCUGcUGAucuUCCgUUCCCGCg -3'
miRNA:   3'- -GGUAGC---------------CGGAC-AUU---AGGgAAGGGCGg -5'
11995 5' -54.8 NC_003278.1 + 8446 0.7 0.380254
Target:  5'- gCCAUCugcGGCCUGgaAAUCCUgcucuaCCGCCc -3'
miRNA:   3'- -GGUAG---CCGGACa-UUAGGGaag---GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.