miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11996 5' -57 NC_003278.1 + 15084 0.65 0.539924
Target:  5'- aCCGUGAC-UUUCGCguaggucccggcGGuGaCGCCGGAg -3'
miRNA:   3'- cGGCACUGcAAAGUGa-----------CC-C-GCGGCCU- -5'
11996 5' -57 NC_003278.1 + 33038 0.66 0.509936
Target:  5'- uGUCGUGcCGcg-CACUGGccgacaccGCGCCGGc -3'
miRNA:   3'- -CGGCACuGCaaaGUGACC--------CGCGGCCu -5'
11996 5' -57 NC_003278.1 + 7455 0.66 0.499393
Target:  5'- cGCCGcGACcag-CGCUGGGCGauCCGcGAc -3'
miRNA:   3'- -CGGCaCUGcaaaGUGACCCGC--GGC-CU- -5'
11996 5' -57 NC_003278.1 + 21060 0.67 0.428622
Target:  5'- cGUCGUGGCGg--UGCUGgccGGCGCCGc- -3'
miRNA:   3'- -CGGCACUGCaaaGUGAC---CCGCGGCcu -5'
11996 5' -57 NC_003278.1 + 22081 0.68 0.40015
Target:  5'- cGCCGcGACcgacgaACUGGcGCGCCGGc -3'
miRNA:   3'- -CGGCaCUGcaaag-UGACC-CGCGGCCu -5'
11996 5' -57 NC_003278.1 + 1764 0.68 0.39737
Target:  5'- cGCCGUGcgcagcGCGUcgaugucuuccucaUUCugUGcGGCGUCGGu -3'
miRNA:   3'- -CGGCAC------UGCA--------------AAGugAC-CCGCGGCCu -5'
11996 5' -57 NC_003278.1 + 16721 0.69 0.364119
Target:  5'- cGCgGUGACGUgcgACcaGGGCGUCGGu -3'
miRNA:   3'- -CGgCACUGCAaagUGa-CCCGCGGCCu -5'
11996 5' -57 NC_003278.1 + 13709 0.69 0.346965
Target:  5'- uGCCGUaccuggccugGGCGUUcuccgucgaUCGCUGGGacagcaccugGCCGGAg -3'
miRNA:   3'- -CGGCA----------CUGCAA---------AGUGACCCg---------CGGCCU- -5'
11996 5' -57 NC_003278.1 + 9587 0.69 0.341933
Target:  5'- gGCCGUGAUGgugCcggccuggcgggaaaGCUGGGCGUCGc- -3'
miRNA:   3'- -CGGCACUGCaaaG---------------UGACCCGCGGCcu -5'
11996 5' -57 NC_003278.1 + 30017 0.72 0.207431
Target:  5'- aCCGUGGCGUUcuggcucaUCACcaGGGUGCCGcGGa -3'
miRNA:   3'- cGGCACUGCAA--------AGUGa-CCCGCGGC-CU- -5'
11996 5' -57 NC_003278.1 + 28604 0.72 0.205209
Target:  5'- cCCGUGGCGgcaagCugccgaaacugauCUGGGCGCUGGAc -3'
miRNA:   3'- cGGCACUGCaaa--Gu------------GACCCGCGGCCU- -5'
11996 5' -57 NC_003278.1 + 28710 0.75 0.149232
Target:  5'- cGCCG-GGUGUacCugUGGGCGCCGGGu -3'
miRNA:   3'- -CGGCaCUGCAaaGugACCCGCGGCCU- -5'
11996 5' -57 NC_003278.1 + 19093 1.1 0.000355
Target:  5'- gGCCGUGACGUUUCACUGGGCGCCGGAc -3'
miRNA:   3'- -CGGCACUGCAAAGUGACCCGCGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.