Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11997 | 3' | -54 | NC_003278.1 | + | 27431 | 0.66 | 0.686731 |
Target: 5'- cGGUcggaGCCGGaggaaagauacugguUGGCGu-UGGCCUGCa -3' miRNA: 3'- -UCAagg-CGGCU---------------ACCGCuuACUGGACG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 17174 | 0.66 | 0.659436 |
Target: 5'- uGGUgcccgCCuuGCCGAUGGCa----GCCUGCa -3' miRNA: 3'- -UCAa----GG--CGGCUACCGcuuacUGGACG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 28250 | 0.66 | 0.670838 |
Target: 5'- gGGUUCCuuGUCGGUGGCcggcGAUcGCUUGCu -3' miRNA: 3'- -UCAAGG--CGGCUACCGc---UUAcUGGACG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 7451 | 0.66 | 0.670838 |
Target: 5'- cGUUgCCGCUGGUGGUG-GUGucguACCaGCg -3' miRNA: 3'- uCAA-GGCGGCUACCGCuUAC----UGGaCG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 14802 | 0.66 | 0.675388 |
Target: 5'- gGGUUgCUGCCGGcggugacgaugccauUGGCGuugacGGUGACC-GCa -3' miRNA: 3'- -UCAA-GGCGGCU---------------ACCGC-----UUACUGGaCG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 23314 | 0.67 | 0.563667 |
Target: 5'- cAGUUCCgggaucagguccgGCCGGccccUGGCGAgcgcguagcugagcGUGGCgCUGCc -3' miRNA: 3'- -UCAAGG-------------CGGCU----ACCGCU--------------UACUG-GACG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 21411 | 0.67 | 0.579489 |
Target: 5'- cGGcgCCGCCGAcgcgcuggacGGCGcgcuUGAUCUGCc -3' miRNA: 3'- -UCaaGGCGGCUa---------CCGCuu--ACUGGACG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 8812 | 0.67 | 0.609098 |
Target: 5'- cAGcgCCGCCGAgGGCGGccagggucuucgGGCCaGCg -3' miRNA: 3'- -UCaaGGCGGCUaCCGCUua----------CUGGaCG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 23008 | 0.67 | 0.620535 |
Target: 5'- ---cCCGCCagGAUGGCGAccagcaccgcuACCUGCa -3' miRNA: 3'- ucaaGGCGG--CUACCGCUuac--------UGGACG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 33205 | 0.67 | 0.613671 |
Target: 5'- cGGUUCCGCCGGcugcGGCcGAGgccaucGCCgGCg -3' miRNA: 3'- -UCAAGGCGGCUa---CCG-CUUac----UGGaCG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 21422 | 0.68 | 0.533503 |
Target: 5'- gGGUgUUCGCCGAccugGGCGGguucaccAUGGCCgGCc -3' miRNA: 3'- -UCA-AGGCGGCUa---CCGCU-------UACUGGaCG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 22814 | 0.68 | 0.512625 |
Target: 5'- cGGUgcUCgCGCCGGcgcUGGCG---GGCCUGCc -3' miRNA: 3'- -UCA--AG-GCGGCU---ACCGCuuaCUGGACG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 15343 | 0.69 | 0.459437 |
Target: 5'- aGGggCUGguuaCCGGUGGCG-GUGGCCUGa -3' miRNA: 3'- -UCaaGGC----GGCUACCGCuUACUGGACg -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 4549 | 0.69 | 0.469848 |
Target: 5'- gAGUUCggCGCCuAUGGCGAcgugcUGGCgUGCa -3' miRNA: 3'- -UCAAG--GCGGcUACCGCUu----ACUGgACG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 6942 | 0.7 | 0.449151 |
Target: 5'- ---aCCGCCucUGGCGGuUGACCgaGCg -3' miRNA: 3'- ucaaGGCGGcuACCGCUuACUGGa-CG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 13266 | 0.7 | 0.416138 |
Target: 5'- cAGgUCCGCCGG-GGCGcugccguugcccugGGcGGCCUGCa -3' miRNA: 3'- -UCaAGGCGGCUaCCGC--------------UUaCUGGACG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 12566 | 0.71 | 0.375428 |
Target: 5'- cGGUUCCcaGCgcaugagggccauggCGGUGGCGGcAUaGACCUGCa -3' miRNA: 3'- -UCAAGG--CG---------------GCUACCGCU-UA-CUGGACG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 21055 | 0.72 | 0.336648 |
Target: 5'- ---gCCGCCGucGUGGCGGugcUGGCCgGCg -3' miRNA: 3'- ucaaGGCGGC--UACCGCUu--ACUGGaCG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 33033 | 0.73 | 0.266683 |
Target: 5'- ----aUGCCGAaGGCGAAcgaccggcUGACCUGCa -3' miRNA: 3'- ucaagGCGGCUaCCGCUU--------ACUGGACG- -5' |
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11997 | 3' | -54 | NC_003278.1 | + | 21756 | 0.75 | 0.208956 |
Target: 5'- cGGU--UGUCGAUGGUG-AUGGCCUGCg -3' miRNA: 3'- -UCAagGCGGCUACCGCuUACUGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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