miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11997 5' -55.4 NC_003278.1 + 21351 0.66 0.55692
Target:  5'- -cGCcGUcCAGCGCG-UCGGCGGcGCc -3'
miRNA:   3'- caCGaCGaGUCGCGCuAGCUGUCuCG- -5'
11997 5' -55.4 NC_003278.1 + 30325 0.66 0.550197
Target:  5'- gGUGCUcggacaGCggcaccaccaggcgCAGCGCG-UCGAcCAGGGCc -3'
miRNA:   3'- -CACGA------CGa-------------GUCGCGCuAGCU-GUCUCG- -5'
11997 5' -55.4 NC_003278.1 + 32603 0.66 0.545729
Target:  5'- uUGCcgGCgc-GCGCGGgccgCGACAGAGa -3'
miRNA:   3'- cACGa-CGaguCGCGCUa---GCUGUCUCg -5'
11997 5' -55.4 NC_003278.1 + 29863 0.67 0.501772
Target:  5'- -gGCUGUugUCGcUGCGGUCGGCcucGAGCa -3'
miRNA:   3'- caCGACG--AGUcGCGCUAGCUGu--CUCG- -5'
11997 5' -55.4 NC_003278.1 + 19444 0.67 0.500692
Target:  5'- cUGUUGCgcggcCAGCGCGGUgcUGACcugcuccAGGGCg -3'
miRNA:   3'- cACGACGa----GUCGCGCUA--GCUG-------UCUCG- -5'
11997 5' -55.4 NC_003278.1 + 14843 0.68 0.459437
Target:  5'- -aGCUGCUCAG-GCuGAacgCGGCcGGGCu -3'
miRNA:   3'- caCGACGAGUCgCG-CUa--GCUGuCUCG- -5'
11997 5' -55.4 NC_003278.1 + 14930 0.68 0.438993
Target:  5'- ----cGCUCAGCGCGAgCGGCGauGCa -3'
miRNA:   3'- cacgaCGAGUCGCGCUaGCUGUcuCG- -5'
11997 5' -55.4 NC_003278.1 + 16944 0.68 0.428967
Target:  5'- -gGCUGC-C-GCGCGcgCGGCgaaGGGGCg -3'
miRNA:   3'- caCGACGaGuCGCGCuaGCUG---UCUCG- -5'
11997 5' -55.4 NC_003278.1 + 26574 0.68 0.423017
Target:  5'- -aGgUGgUCAGCGCGAUCaucggcgccuacccuGGCGGAcGCg -3'
miRNA:   3'- caCgACgAGUCGCGCUAG---------------CUGUCU-CG- -5'
11997 5' -55.4 NC_003278.1 + 29396 0.68 0.409328
Target:  5'- gGUGC-GCggCGGCGUGAUCGAgAaGGCc -3'
miRNA:   3'- -CACGaCGa-GUCGCGCUAGCUgUcUCG- -5'
11997 5' -55.4 NC_003278.1 + 5415 0.69 0.390259
Target:  5'- -aGCUGCagGGCGagaaGAUCGGCAucGGCg -3'
miRNA:   3'- caCGACGagUCGCg---CUAGCUGUc-UCG- -5'
11997 5' -55.4 NC_003278.1 + 32978 0.69 0.389321
Target:  5'- gGUGUcgGC-CAGUGCGcggcacgacaacgGUCGAUGGAGCg -3'
miRNA:   3'- -CACGa-CGaGUCGCGC-------------UAGCUGUCUCG- -5'
11997 5' -55.4 NC_003278.1 + 30869 0.7 0.3452
Target:  5'- -cGCUGUcgcgCuGgGCGAUCGGCAGcaGGCg -3'
miRNA:   3'- caCGACGa---GuCgCGCUAGCUGUC--UCG- -5'
11997 5' -55.4 NC_003278.1 + 29238 0.7 0.336648
Target:  5'- -cGcCUGCUCGGCGUGGcCGcCGGuGCg -3'
miRNA:   3'- caC-GACGAGUCGCGCUaGCuGUCuCG- -5'
11997 5' -55.4 NC_003278.1 + 33121 0.7 0.320012
Target:  5'- -cGCUGCagAGCuuGGUCGACcccgaAGAGCa -3'
miRNA:   3'- caCGACGagUCGcgCUAGCUG-----UCUCG- -5'
11997 5' -55.4 NC_003278.1 + 28428 0.71 0.303999
Target:  5'- -aGCgGCUCGG-GCGAUCGAUuaGGCg -3'
miRNA:   3'- caCGaCGAGUCgCGCUAGCUGucUCG- -5'
11997 5' -55.4 NC_003278.1 + 2208 0.71 0.28861
Target:  5'- -cGcCUGCUCAGC-CGggCGACGuucGAGCa -3'
miRNA:   3'- caC-GACGAGUCGcGCuaGCUGU---CUCG- -5'
11997 5' -55.4 NC_003278.1 + 34408 0.72 0.25968
Target:  5'- cUGCUGCUgCAGUGCGcgcagCGcCGGGGCc -3'
miRNA:   3'- cACGACGA-GUCGCGCua---GCuGUCUCG- -5'
11997 5' -55.4 NC_003278.1 + 23253 0.72 0.239569
Target:  5'- -cGCUGUaggcgguuccacUCGGCGCGggCGgcgcGCAGGGCg -3'
miRNA:   3'- caCGACG------------AGUCGCGCuaGC----UGUCUCG- -5'
11997 5' -55.4 NC_003278.1 + 13789 0.72 0.239569
Target:  5'- gGUGCUGUcCca-GCGAUCGACGGAGa -3'
miRNA:   3'- -CACGACGaGucgCGCUAGCUGUCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.