miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11998 3' -56 NC_003278.1 + 27449 0.66 0.518998
Target:  5'- uUCAuGGCcgaacAACUCGCccagcGCGCCUGGGa -3'
miRNA:   3'- gAGUuCCG-----UUGAGCGcu---CGCGGACUU- -5'
11998 3' -56 NC_003278.1 + 13952 0.66 0.497152
Target:  5'- -aCGAGGagaccguGCUCGagcCGAGCGCCUGc- -3'
miRNA:   3'- gaGUUCCgu-----UGAGC---GCUCGCGGACuu -5'
11998 3' -56 NC_003278.1 + 28414 0.66 0.497152
Target:  5'- uUCAagccGGGCGACagccCGCGcGGCGUCUGGu -3'
miRNA:   3'- gAGU----UCCGUUGa---GCGC-UCGCGGACUu -5'
11998 3' -56 NC_003278.1 + 30129 0.66 0.47573
Target:  5'- -cCGAGGCccgcguGCUggagugcuucCGCGAGCGgCUGAAg -3'
miRNA:   3'- gaGUUCCGu-----UGA----------GCGCUCGCgGACUU- -5'
11998 3' -56 NC_003278.1 + 31729 0.67 0.444489
Target:  5'- cCUCc--GCGACUU-CGAGCGCCUGGc -3'
miRNA:   3'- -GAGuucCGUUGAGcGCUCGCGGACUu -5'
11998 3' -56 NC_003278.1 + 20032 0.68 0.385658
Target:  5'- gCUCAAccuGGCAGC-CGCGGGCGacaUGGAc -3'
miRNA:   3'- -GAGUU---CCGUUGaGCGCUCGCgg-ACUU- -5'
11998 3' -56 NC_003278.1 + 23237 0.69 0.349403
Target:  5'- aCUCGgcgcGGGCGGCgCGCaGGGCGCuCUGGc -3'
miRNA:   3'- -GAGU----UCCGUUGaGCG-CUCGCG-GACUu -5'
11998 3' -56 NC_003278.1 + 19355 0.69 0.349403
Target:  5'- gCUUcAGGC-GCUCGCGAGuUGCCUuGAGc -3'
miRNA:   3'- -GAGuUCCGuUGAGCGCUC-GCGGA-CUU- -5'
11998 3' -56 NC_003278.1 + 10499 0.71 0.229338
Target:  5'- cCUCGAGGCugucagccAUUgGcCGGGCGCCUGAu -3'
miRNA:   3'- -GAGUUCCGu-------UGAgC-GCUCGCGGACUu -5'
11998 3' -56 NC_003278.1 + 9552 0.72 0.205345
Target:  5'- cCUCGAGGCcGCccuuuccCGCGAGCGCCa--- -3'
miRNA:   3'- -GAGUUCCGuUGa------GCGCUCGCGGacuu -5'
11998 3' -56 NC_003278.1 + 19292 1.06 0.0006
Target:  5'- gCUCAAGGCAACUCGCGAGCGCCUGAAg -3'
miRNA:   3'- -GAGUUCCGUUGAGCGCUCGCGGACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.