miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11998 5' -60.1 NC_003278.1 + 8169 0.66 0.337809
Target:  5'- aCGCaggUCGGCAGgaucAGCGACagcagGCGCGaCCa -3'
miRNA:   3'- -GCG---AGUCGUC----UCGCUGca---CGCGC-GGa -5'
11998 5' -60.1 NC_003278.1 + 23163 0.66 0.321675
Target:  5'- aGCgacCGcCAGAGCGcCcUGCGCGCCg -3'
miRNA:   3'- gCGa--GUcGUCUCGCuGcACGCGCGGa -5'
11998 5' -60.1 NC_003278.1 + 4550 0.67 0.306124
Target:  5'- aGUUCGGCGccuauGGCGACGUGCugGCGUg- -3'
miRNA:   3'- gCGAGUCGUc----UCGCUGCACG--CGCGga -5'
11998 5' -60.1 NC_003278.1 + 30300 0.67 0.298568
Target:  5'- gCGCUCAGCAGAcccuGaUGACGaugGCccuggaGCGCCa -3'
miRNA:   3'- -GCGAGUCGUCU----C-GCUGCa--CG------CGCGGa -5'
11998 5' -60.1 NC_003278.1 + 19596 0.67 0.291156
Target:  5'- gGC-CAGCAuGAGCG-CGaccUGCGCGCg- -3'
miRNA:   3'- gCGaGUCGU-CUCGCuGC---ACGCGCGga -5'
11998 5' -60.1 NC_003278.1 + 14213 0.68 0.262951
Target:  5'- uGCUCAucGguGAcGcCGGCG-GCGCGCCc -3'
miRNA:   3'- gCGAGU--CguCU-C-GCUGCaCGCGCGGa -5'
11998 5' -60.1 NC_003278.1 + 13964 0.68 0.256255
Target:  5'- uGCUCgAGCcGAGCgccugcucgacGACGUGCGC-CCa -3'
miRNA:   3'- gCGAG-UCGuCUCG-----------CUGCACGCGcGGa -5'
11998 5' -60.1 NC_003278.1 + 7417 0.68 0.254274
Target:  5'- gCGCUCGGCcacuucGGCGGCGguggcagacugcacUGCGCGCa- -3'
miRNA:   3'- -GCGAGUCGuc----UCGCUGC--------------ACGCGCGga -5'
11998 5' -60.1 NC_003278.1 + 23048 0.68 0.2497
Target:  5'- cCGCgaCAGCuacGA-CGGCGUGCGCGCg- -3'
miRNA:   3'- -GCGa-GUCGu--CUcGCUGCACGCGCGga -5'
11998 5' -60.1 NC_003278.1 + 1879 0.68 0.2497
Target:  5'- uCGUUCAGCAGGGCGcucUGUaGgGCGCa- -3'
miRNA:   3'- -GCGAGUCGUCUCGCu--GCA-CgCGCGga -5'
11998 5' -60.1 NC_003278.1 + 2204 0.68 0.237006
Target:  5'- uGCUCAGCcGGGCGACGUuCGaGCa- -3'
miRNA:   3'- gCGAGUCGuCUCGCUGCAcGCgCGga -5'
11998 5' -60.1 NC_003278.1 + 27968 0.69 0.213241
Target:  5'- aGCUCA--AGGcCGACGUGCuGCGCCg -3'
miRNA:   3'- gCGAGUcgUCUcGCUGCACG-CGCGGa -5'
11998 5' -60.1 NC_003278.1 + 7830 0.69 0.202144
Target:  5'- aCGC-CGGCGGuGCGACcguaGUGC-CGCCa -3'
miRNA:   3'- -GCGaGUCGUCuCGCUG----CACGcGCGGa -5'
11998 5' -60.1 NC_003278.1 + 22745 0.7 0.191552
Target:  5'- cCGCUgAGCGGGcGCGgaugcugagcACGUccgGCGCGCCg -3'
miRNA:   3'- -GCGAgUCGUCU-CGC----------UGCA---CGCGCGGa -5'
11998 5' -60.1 NC_003278.1 + 3315 0.7 0.190006
Target:  5'- aCGCccugCAGCAaGGGCGACuGUGCgaggaccgcaucugGCGCCa -3'
miRNA:   3'- -GCGa---GUCGU-CUCGCUG-CACG--------------CGCGGa -5'
11998 5' -60.1 NC_003278.1 + 30169 0.7 0.18145
Target:  5'- gGUUCA-CAGcGCGACGcUGCGCGCUc -3'
miRNA:   3'- gCGAGUcGUCuCGCUGC-ACGCGCGGa -5'
11998 5' -60.1 NC_003278.1 + 8605 0.7 0.18145
Target:  5'- gGcCUCAGCAGGGCGGCGacguUGC-CGCg- -3'
miRNA:   3'- gC-GAGUCGUCUCGCUGC----ACGcGCGga -5'
11998 5' -60.1 NC_003278.1 + 14929 0.7 0.176578
Target:  5'- aCGCUCAGCGcGAGCGGCGaUGCaaCGUg- -3'
miRNA:   3'- -GCGAGUCGU-CUCGCUGC-ACGc-GCGga -5'
11998 5' -60.1 NC_003278.1 + 2 0.7 0.176578
Target:  5'- gGCgUGGCGGGGgGACGacugcGCGCGCCg -3'
miRNA:   3'- gCGaGUCGUCUCgCUGCa----CGCGCGGa -5'
11998 5' -60.1 NC_003278.1 + 159 0.72 0.133944
Target:  5'- gGCUUuGCuGGGCGuACGUGuCGUGCCUg -3'
miRNA:   3'- gCGAGuCGuCUCGC-UGCAC-GCGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.