Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11999 | 3' | -56.1 | NC_003278.1 | + | 19504 | 0.66 | 0.525517 |
Target: 5'- gAGcGCGCGGGUGggGuuGCcGGCggCGGc -3' miRNA: 3'- -UC-CGUGCCCACuuUcgUGaCCGa-GUC- -5' |
|||||||
11999 | 3' | -56.1 | NC_003278.1 | + | 32823 | 0.66 | 0.48228 |
Target: 5'- uGGCGCGGGUccgcGAcAGCAaaugcaccCUGGC-CGGu -3' miRNA: 3'- uCCGUGCCCA----CUuUCGU--------GACCGaGUC- -5' |
|||||||
11999 | 3' | -56.1 | NC_003278.1 | + | 32363 | 0.67 | 0.420886 |
Target: 5'- uGGCACuGGUGcGAGCcggcagcgACUGGCgCAGc -3' miRNA: 3'- uCCGUGcCCACuUUCG--------UGACCGaGUC- -5' |
|||||||
11999 | 3' | -56.1 | NC_003278.1 | + | 13430 | 0.68 | 0.411117 |
Target: 5'- cGGGCcCGGGcGGcaucGAGUAUcGGCUCGGa -3' miRNA: 3'- -UCCGuGCCCaCU----UUCGUGaCCGAGUC- -5' |
|||||||
11999 | 3' | -56.1 | NC_003278.1 | + | 2172 | 0.7 | 0.313471 |
Target: 5'- cGGUGCGGGaUGAAGGUcUUGGC-CAGc -3' miRNA: 3'- uCCGUGCCC-ACUUUCGuGACCGaGUC- -5' |
|||||||
11999 | 3' | -56.1 | NC_003278.1 | + | 19407 | 1.08 | 0.000484 |
Target: 5'- cAGGCACGGGUGAAAGCACUGGCUCAGc -3' miRNA: 3'- -UCCGUGCCCACUUUCGUGACCGAGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home