miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11999 5' -65.4 NC_003278.1 + 6727 0.66 0.187575
Target:  5'- uGCCGCCGGUcuuCUgUGCCUugaGCGCGg -3'
miRNA:   3'- gCGGCGGCCGuu-GGgGUGGG---CGCGCg -5'
11999 5' -65.4 NC_003278.1 + 4594 0.66 0.182784
Target:  5'- gCGCCgaacucaccaGCCGGcCAGgCCCACuuGaUGUGCu -3'
miRNA:   3'- -GCGG----------CGGCC-GUUgGGGUGggC-GCGCG- -5'
11999 5' -65.4 NC_003278.1 + 9020 0.66 0.182784
Target:  5'- gGCUauGCCGGCGGCaCCGCCgaGCaccaGCGCc -3'
miRNA:   3'- gCGG--CGGCCGUUGgGGUGGg-CG----CGCG- -5'
11999 5' -65.4 NC_003278.1 + 21054 0.66 0.178102
Target:  5'- uGCCGCCgucguGGCgGugCUgGCCgGCGcCGCg -3'
miRNA:   3'- gCGGCGG-----CCG-UugGGgUGGgCGC-GCG- -5'
11999 5' -65.4 NC_003278.1 + 11899 0.66 0.178102
Target:  5'- gGUCGCCGGuCAACaCacggaCGCgCUGCGCGg -3'
miRNA:   3'- gCGGCGGCC-GUUG-Gg----GUG-GGCGCGCg -5'
11999 5' -65.4 NC_003278.1 + 6778 0.66 0.177178
Target:  5'- uCGCCGCCGGCcaugccacucuggaaGgacuuucuguagagaGCCCCggccaACCCGgGCa- -3'
miRNA:   3'- -GCGGCGGCCG---------------U---------------UGGGG-----UGGGCgCGcg -5'
11999 5' -65.4 NC_003278.1 + 2703 0.67 0.173526
Target:  5'- aCGCCgGCUGGacCGACCUgGCCCaG-GCGCu -3'
miRNA:   3'- -GCGG-CGGCC--GUUGGGgUGGG-CgCGCG- -5'
11999 5' -65.4 NC_003278.1 + 21072 0.67 0.173526
Target:  5'- gGuuGgCGGCcaGGCCCCACa-GCGCGa -3'
miRNA:   3'- gCggCgGCCG--UUGGGGUGggCGCGCg -5'
11999 5' -65.4 NC_003278.1 + 4473 0.67 0.173526
Target:  5'- gGCCGCgCaGUacGACCCgaaCACCUacgGCGCGCg -3'
miRNA:   3'- gCGGCG-GcCG--UUGGG---GUGGG---CGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 28802 0.67 0.173526
Target:  5'- aGCgCGUCGcGCAgaucgagaaagACCUCAagaCCGCGCGUc -3'
miRNA:   3'- gCG-GCGGC-CGU-----------UGGGGUg--GGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 19566 0.67 0.170831
Target:  5'- aGCaaCGCCGGCAucagcacccgcaACCUcggccagcaugagcgCgACCUGCGCGCg -3'
miRNA:   3'- gCG--GCGGCCGU------------UGGG---------------G-UGGGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 19185 0.67 0.169056
Target:  5'- cCGCCGauGGCGAaugaCCUGCagCUGCGCGUg -3'
miRNA:   3'- -GCGGCggCCGUUg---GGGUG--GGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 32967 0.67 0.169056
Target:  5'- -uCCGCCGGCgcgGugUCgGCCaGUGCGCg -3'
miRNA:   3'- gcGGCGGCCG---UugGGgUGGgCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 2980 0.67 0.164688
Target:  5'- gCGCCuCCGGCGGuaCCGggcggcaaguUCCGCGUGCu -3'
miRNA:   3'- -GCGGcGGCCGUUggGGU----------GGGCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 20016 0.67 0.164688
Target:  5'- gCGCCaugcCCGGCAugCUCAaccuggcagCCGCGgGCg -3'
miRNA:   3'- -GCGGc---GGCCGUugGGGUg--------GGCGCgCG- -5'
11999 5' -65.4 NC_003278.1 + 23162 0.67 0.164688
Target:  5'- uGgCGCCGGCGauuGCCuCCugCUucuuCGCGCu -3'
miRNA:   3'- gCgGCGGCCGU---UGG-GGugGGc---GCGCG- -5'
11999 5' -65.4 NC_003278.1 + 22085 0.67 0.160423
Target:  5'- uCGUCGCC-GCGACCgacgaACUgGCGCGCc -3'
miRNA:   3'- -GCGGCGGcCGUUGGgg---UGGgCGCGCG- -5'
11999 5' -65.4 NC_003278.1 + 26664 0.67 0.160423
Target:  5'- aCGCCuacgagaacGCCGGCAGCaaaCCGCUCaGCGaCGa -3'
miRNA:   3'- -GCGG---------CGGCCGUUGg--GGUGGG-CGC-GCg -5'
11999 5' -65.4 NC_003278.1 + 21478 0.67 0.160423
Target:  5'- cCGCCcagGUCGGCGAa--CACCCGCGacgGCg -3'
miRNA:   3'- -GCGG---CGGCCGUUgggGUGGGCGCg--CG- -5'
11999 5' -65.4 NC_003278.1 + 22672 0.67 0.160423
Target:  5'- gGCgCGCCGGaCGugCUCAgcaUCCGCGCccGCu -3'
miRNA:   3'- gCG-GCGGCC-GUugGGGU---GGGCGCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.