miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
120 5' -56.6 AC_000006.1 + 21546 0.66 0.429713
Target:  5'- --cGUGUaCCGCA--ACUCGCGcGCGCa -3'
miRNA:   3'- uuuCGCA-GGCGUcaUGAGCGU-CGCGa -5'
120 5' -56.6 AC_000006.1 + 7878 1.06 0.000548
Target:  5'- aAAAGCGUCCGCAGUACUCGCAGCGCUg -3'
miRNA:   3'- -UUUCGCAGGCGUCAUGAGCGUCGCGA- -5'
120 5' -56.6 AC_000006.1 + 5303 0.72 0.176572
Target:  5'- aAGAGCGUCCGCAGgcgggACagaggagggaUUGCAGgGCg -3'
miRNA:   3'- -UUUCGCAGGCGUCa----UG----------AGCGUCgCGa -5'
120 5' -56.6 AC_000006.1 + 16910 0.68 0.345602
Target:  5'- --uGCG-CUGCAG-GCgUCGCAGCGCc -3'
miRNA:   3'- uuuCGCaGGCGUCaUG-AGCGUCGCGa -5'
120 5' -56.6 AC_000006.1 + 5379 0.67 0.419782
Target:  5'- aAAAGCGUCCGCuccgcAGUGggCGCAGaCGg- -3'
miRNA:   3'- -UUUCGCAGGCG-----UCAUgaGCGUC-GCga -5'
120 5' -56.6 AC_000006.1 + 15160 0.67 0.419782
Target:  5'- --cGCGUCCGCGGccACUucCGCgcuccguggGGCGCUu -3'
miRNA:   3'- uuuCGCAGGCGUCa-UGA--GCG---------UCGCGA- -5'
120 5' -56.6 AC_000006.1 + 10089 0.66 0.46031
Target:  5'- gGAGGCG--CGCGGgaACUCGCGGaCGCg -3'
miRNA:   3'- -UUUCGCagGCGUCa-UGAGCGUC-GCGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.