miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12000 5' -56.5 NC_003278.1 + 19492 0.66 0.515261
Target:  5'- gGGGuuGCCGGcGGCGgCCAUCuGCugAGCc -3'
miRNA:   3'- -UCCgcCGGUUaCCGC-GGUAGuUG--UCG- -5'
12000 5' -56.5 NC_003278.1 + 13407 0.66 0.504438
Target:  5'- cGGCucggacuccgGGCCGAUGGUGgCCAgguAgAGCg -3'
miRNA:   3'- uCCG----------CCGGUUACCGC-GGUaguUgUCG- -5'
12000 5' -56.5 NC_003278.1 + 31553 0.66 0.504438
Target:  5'- uGGCGGCCAGgaaaaCGCagggagggCGGCGGCa -3'
miRNA:   3'- uCCGCCGGUUacc--GCGgua-----GUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 9021 0.66 0.493715
Target:  5'- -uGCGGCCAGUuggucggcGGUGaCCugAUCGugGGCg -3'
miRNA:   3'- ucCGCCGGUUA--------CCGC-GG--UAGUugUCG- -5'
12000 5' -56.5 NC_003278.1 + 28605 0.66 0.493715
Target:  5'- aAGGCguuggacucauGGCCGAcacGGCGUCGaugccguggugCAGCAGCg -3'
miRNA:   3'- -UCCG-----------CCGGUUa--CCGCGGUa----------GUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 33133 0.66 0.493715
Target:  5'- cGGCcuguGCCA--GGUGCCAUC--CAGCg -3'
miRNA:   3'- uCCGc---CGGUuaCCGCGGUAGuuGUCG- -5'
12000 5' -56.5 NC_003278.1 + 14493 0.66 0.487331
Target:  5'- uGGGCGGgCAGuUGGCGaccgccacgaacuucCCGUCGGCGu- -3'
miRNA:   3'- -UCCGCCgGUU-ACCGC---------------GGUAGUUGUcg -5'
12000 5' -56.5 NC_003278.1 + 23229 0.66 0.483097
Target:  5'- cGGGCGGCgCGcagGGCGCUcu-GGCGGUc -3'
miRNA:   3'- -UCCGCCG-GUua-CCGCGGuagUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 8394 0.66 0.483097
Target:  5'- cGGCagcgauguaGGCCAG-GGCgGCgAUCAACGGa -3'
miRNA:   3'- uCCG---------CCGGUUaCCG-CGgUAGUUGUCg -5'
12000 5' -56.5 NC_003278.1 + 22186 0.66 0.483097
Target:  5'- uGGGCcaGGCCGAcccGGUgucaGCCAUCugccGCAGUa -3'
miRNA:   3'- -UCCG--CCGGUUa--CCG----CGGUAGu---UGUCG- -5'
12000 5' -56.5 NC_003278.1 + 12744 0.66 0.483097
Target:  5'- uGGCGGCaacUGGCuGagGUCGAUGGCg -3'
miRNA:   3'- uCCGCCGguuACCG-CggUAGUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 32071 0.66 0.482041
Target:  5'- -cGCGGCCGGcaccugcUGGa-CCAgaUCAACAGCc -3'
miRNA:   3'- ucCGCCGGUU-------ACCgcGGU--AGUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 27679 0.66 0.47259
Target:  5'- uGGGUGuGCUGggGGCGCUGUUugAGCAGg -3'
miRNA:   3'- -UCCGC-CGGUuaCCGCGGUAG--UUGUCg -5'
12000 5' -56.5 NC_003278.1 + 1752 0.66 0.47259
Target:  5'- -cGCGGUCuucaGCGCCGUgcGCAGCg -3'
miRNA:   3'- ucCGCCGGuuacCGCGGUAguUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 18369 0.66 0.47259
Target:  5'- cGGCGGCC--UGGaucugacaGCCcUCAAgCAGUa -3'
miRNA:   3'- uCCGCCGGuuACCg-------CGGuAGUU-GUCG- -5'
12000 5' -56.5 NC_003278.1 + 32977 0.66 0.47259
Target:  5'- cGGUgucGGCCAGUGcGCGgCAcgaCAACGGUc -3'
miRNA:   3'- uCCG---CCGGUUAC-CGCgGUa--GUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 9015 0.66 0.4622
Target:  5'- cGGGCGGCUAugccGGCGgCAccgccgagCAcCAGCg -3'
miRNA:   3'- -UCCGCCGGUua--CCGCgGUa-------GUuGUCG- -5'
12000 5' -56.5 NC_003278.1 + 30643 0.66 0.4622
Target:  5'- cGGGCGuguGCCGAacgcacGGCaCUGUCGACGGCc -3'
miRNA:   3'- -UCCGC---CGGUUa-----CCGcGGUAGUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 12393 0.67 0.451931
Target:  5'- -aGCGGgCGAgGGCGCCGccggUAugGGCa -3'
miRNA:   3'- ucCGCCgGUUaCCGCGGUa---GUugUCG- -5'
12000 5' -56.5 NC_003278.1 + 14730 0.67 0.451931
Target:  5'- gAGGCuGGUaaggCGAUGGUGCgAUCcGCAGa -3'
miRNA:   3'- -UCCG-CCG----GUUACCGCGgUAGuUGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.