miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12000 5' -56.5 NC_003278.1 + 15344 0.68 0.374619
Target:  5'- gGGGCuGGuuaCCGGUGGCggugGCCugaCGGCAGCa -3'
miRNA:   3'- -UCCG-CC---GGUUACCG----CGGua-GUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 31629 0.69 0.322808
Target:  5'- uGGGCGGC----GGCGCCGcaggcuUCAACcgGGCg -3'
miRNA:   3'- -UCCGCCGguuaCCGCGGU------AGUUG--UCG- -5'
12000 5' -56.5 NC_003278.1 + 26573 0.69 0.339466
Target:  5'- cAGGUGGUCA---GCGCgAUCAuCGGCg -3'
miRNA:   3'- -UCCGCCGGUuacCGCGgUAGUuGUCG- -5'
12000 5' -56.5 NC_003278.1 + 17240 0.69 0.348026
Target:  5'- uAGcGCGGUCAucGGCGgCGUCAGC-GCc -3'
miRNA:   3'- -UC-CGCCGGUuaCCGCgGUAGUUGuCG- -5'
12000 5' -56.5 NC_003278.1 + 34634 0.69 0.348026
Target:  5'- -cGCGGaCCAgAUGGgGCaCAccUCGACGGCg -3'
miRNA:   3'- ucCGCC-GGU-UACCgCG-GU--AGUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 9092 0.68 0.35586
Target:  5'- gAGuCGGCCAGUuggGGCGCCuuccagAUCAugggguuccacugGCAGCg -3'
miRNA:   3'- -UCcGCCGGUUA---CCGCGG------UAGU-------------UGUCG- -5'
12000 5' -56.5 NC_003278.1 + 28352 0.68 0.365603
Target:  5'- aAGGCGGCUAcUGGgaaCGCCuaAUCGAUcGCc -3'
miRNA:   3'- -UCCGCCGGUuACC---GCGG--UAGUUGuCG- -5'
12000 5' -56.5 NC_003278.1 + 30832 0.68 0.374619
Target:  5'- -aGCGGCCAGagcGGCGUgAUCGGuCGGUu -3'
miRNA:   3'- ucCGCCGGUUa--CCGCGgUAGUU-GUCG- -5'
12000 5' -56.5 NC_003278.1 + 9580 0.68 0.374619
Target:  5'- cAGGCccaGGCCGAccUGGa-CCAaCAGCGGCa -3'
miRNA:   3'- -UCCG---CCGGUU--ACCgcGGUaGUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 8661 0.69 0.322808
Target:  5'- gAGGaCGGCCAcuucGGCGCCGcCAccgaggacGCGGUg -3'
miRNA:   3'- -UCC-GCCGGUua--CCGCGGUaGU--------UGUCG- -5'
12000 5' -56.5 NC_003278.1 + 14050 0.69 0.321992
Target:  5'- uGGCccgccacGGCC--UGGCGaCgAUCGACGGCg -3'
miRNA:   3'- uCCG-------CCGGuuACCGC-GgUAGUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 20348 0.69 0.321176
Target:  5'- aAGGCGguaGCCAAgcugGGCGuCCAgaccaaggaugcCAACGGCa -3'
miRNA:   3'- -UCCGC---CGGUUa---CCGC-GGUa-----------GUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 22952 0.76 0.116571
Target:  5'- -uGCGGCCGGUGGCGgCAagacugcCAGCGGCc -3'
miRNA:   3'- ucCGCCGGUUACCGCgGUa------GUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 2037 0.75 0.134719
Target:  5'- cGGCgcauguacuuGGCCAGcGGCGCCugCAGCGGCa -3'
miRNA:   3'- uCCG----------CCGGUUaCCGCGGuaGUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 15151 0.7 0.269359
Target:  5'- gAGGCGGUaccggCAAUGGUauugGUCAggcugCAACGGCg -3'
miRNA:   3'- -UCCGCCG-----GUUACCG----CGGUa----GUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 20512 0.7 0.276536
Target:  5'- cGGCaccCUGAUGcGCGCCGUCGAgGGCg -3'
miRNA:   3'- uCCGcc-GGUUAC-CGCGGUAGUUgUCG- -5'
12000 5' -56.5 NC_003278.1 + 29246 0.7 0.29898
Target:  5'- cGGcGUGGCCGccGGUGCgAUCuucaccGGCAGCg -3'
miRNA:   3'- -UC-CGCCGGUuaCCGCGgUAG------UUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 32592 0.69 0.304416
Target:  5'- cGGCGugcGCCGcUggaccgacaccucgGGCGCCAUCAuCGGCg -3'
miRNA:   3'- uCCGC---CGGUuA--------------CCGCGGUAGUuGUCG- -5'
12000 5' -56.5 NC_003278.1 + 20808 0.69 0.306768
Target:  5'- cGGC-GCUGAUGGCuaCCGUUGGCAGCc -3'
miRNA:   3'- uCCGcCGGUUACCGc-GGUAGUUGUCG- -5'
12000 5' -56.5 NC_003278.1 + 28249 0.69 0.314711
Target:  5'- -cGCGGCUucgaccUGGCGCUgAUCGAUGGCu -3'
miRNA:   3'- ucCGCCGGuu----ACCGCGG-UAGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.