miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12002 3' -54.9 NC_003278.1 + 7225 0.66 0.638892
Target:  5'- gCGCGCUGGau-CGACGCuGGAGUcGAu -3'
miRNA:   3'- gGCGUGGCCgauGUUGCG-CUUCGuCU- -5'
12002 3' -54.9 NC_003278.1 + 13196 0.66 0.638892
Target:  5'- gCCGC-CCagGGCaacgGCAGCGCcccGGCGGAc -3'
miRNA:   3'- -GGCGuGG--CCGa---UGUUGCGcu-UCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 10017 0.66 0.636623
Target:  5'- gCCGUuguuccugaguuCCGGC-ACGGCGgCG-AGCAGAu -3'
miRNA:   3'- -GGCGu-----------GGCCGaUGUUGC-GCuUCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 22626 0.66 0.627549
Target:  5'- aCgGCGCCGcGCgggGgGAUGCG-AGCAGc -3'
miRNA:   3'- -GgCGUGGC-CGa--UgUUGCGCuUCGUCu -5'
12002 3' -54.9 NC_003278.1 + 25483 0.66 0.61621
Target:  5'- cCUGCACCaGagaaUGCugGACGCGuuGCAGGc -3'
miRNA:   3'- -GGCGUGGcCg---AUG--UUGCGCuuCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 17067 0.66 0.61621
Target:  5'- aUCGCGgUGGCgAUggUGCGAauggGGCGGGu -3'
miRNA:   3'- -GGCGUgGCCGaUGuuGCGCU----UCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 3012 0.66 0.61621
Target:  5'- aCCGaa-CGGCcGCAGCGCGAacGGCu-- -3'
miRNA:   3'- -GGCgugGCCGaUGUUGCGCU--UCGucu -5'
12002 3' -54.9 NC_003278.1 + 2773 0.66 0.604885
Target:  5'- gCGCACCaGCU---GCGCGAcGcCAGAg -3'
miRNA:   3'- gGCGUGGcCGAuguUGCGCUuC-GUCU- -5'
12002 3' -54.9 NC_003278.1 + 9138 0.66 0.604885
Target:  5'- -aGCGCCugGGCUACGucaGCGu-GCAGGc -3'
miRNA:   3'- ggCGUGG--CCGAUGUug-CGCuuCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 16810 0.66 0.604885
Target:  5'- gCCGCACCGGaCUG--GCuCGAAGCc-- -3'
miRNA:   3'- -GGCGUGGCC-GAUguUGcGCUUCGucu -5'
12002 3' -54.9 NC_003278.1 + 4568 0.66 0.604885
Target:  5'- aCGUGCUGGCgUGCAAgGCGGAagAGAu -3'
miRNA:   3'- gGCGUGGCCG-AUGUUgCGCUUcgUCU- -5'
12002 3' -54.9 NC_003278.1 + 27385 0.66 0.603754
Target:  5'- aCGCugCGGCggcuugcUGCAugGUGcuGCGGu -3'
miRNA:   3'- gGCGugGCCG-------AUGUugCGCuuCGUCu -5'
12002 3' -54.9 NC_003278.1 + 19405 0.66 0.601492
Target:  5'- gCCGCGCUGGgUGCGgaagGCGCGcacgucgcucugcuGAGCGu- -3'
miRNA:   3'- -GGCGUGGCCgAUGU----UGCGC--------------UUCGUcu -5'
12002 3' -54.9 NC_003278.1 + 6930 0.66 0.593586
Target:  5'- gCCGCACUuGUcgUGCAguuggaucGCGCGcuuGAGCAGAu -3'
miRNA:   3'- -GGCGUGGcCG--AUGU--------UGCGC---UUCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 9957 0.66 0.593586
Target:  5'- gCCGUGCCGGaacucaggaACAACGCGAccgccuGguGAu -3'
miRNA:   3'- -GGCGUGGCCga-------UGUUGCGCUu-----CguCU- -5'
12002 3' -54.9 NC_003278.1 + 30793 0.67 0.582321
Target:  5'- aCCGCGCUGaaacgccuGCUGCcgaucgcccAGCGCGAcAGCGGc -3'
miRNA:   3'- -GGCGUGGC--------CGAUG---------UUGCGCU-UCGUCu -5'
12002 3' -54.9 NC_003278.1 + 492 0.67 0.582321
Target:  5'- cCCGUACUGGgUACuuucaGUGAaccAGCAGGu -3'
miRNA:   3'- -GGCGUGGCCgAUGuug--CGCU---UCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 19805 0.67 0.5711
Target:  5'- gCCGCcauGCCGGUgccggcCAGCGCGGcAGCGc- -3'
miRNA:   3'- -GGCG---UGGCCGau----GUUGCGCU-UCGUcu -5'
12002 3' -54.9 NC_003278.1 + 12107 0.67 0.5711
Target:  5'- aCCGCGCCGucGCgguagGUggUGCGAuGCAGGg -3'
miRNA:   3'- -GGCGUGGC--CGa----UGuuGCGCUuCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 26894 0.67 0.5711
Target:  5'- aCCGCGCCugauGGCggugGCGACGCcccuGGCGu- -3'
miRNA:   3'- -GGCGUGG----CCGa---UGUUGCGcu--UCGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.