miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12002 3' -54.9 NC_003278.1 + 27837 0.67 0.559933
Target:  5'- uUCGUACUGGCUGacCAGC-CaGAGCAGGu -3'
miRNA:   3'- -GGCGUGGCCGAU--GUUGcGcUUCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 31988 0.67 0.559933
Target:  5'- gCUGCAuCUGGCUGauGgGCGAGGCAu- -3'
miRNA:   3'- -GGCGU-GGCCGAUguUgCGCUUCGUcu -5'
12002 3' -54.9 NC_003278.1 + 30153 0.67 0.559933
Target:  5'- uCCGCGagCGGCUgaagguucACAGCGCGAcGCu-- -3'
miRNA:   3'- -GGCGUg-GCCGA--------UGUUGCGCUuCGucu -5'
12002 3' -54.9 NC_003278.1 + 24 0.67 0.559933
Target:  5'- gCGCGCCGGCgaaugagcCGAUGCGGc-CAGGa -3'
miRNA:   3'- gGCGUGGCCGau------GUUGCGCUucGUCU- -5'
12002 3' -54.9 NC_003278.1 + 8685 0.67 0.542196
Target:  5'- -gGCGCCGGCccagguguucaguCGACGCuGAAGCuGGAg -3'
miRNA:   3'- ggCGUGGCCGau-----------GUUGCG-CUUCG-UCU- -5'
12002 3' -54.9 NC_003278.1 + 13891 0.67 0.52683
Target:  5'- gCCG-ACgGGCUcgACcACGCGgcGCAGGg -3'
miRNA:   3'- -GGCgUGgCCGA--UGuUGCGCuuCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 31872 0.67 0.52683
Target:  5'- cCCGCcaACCGGCgggagGCucCGUuccaugGAAGCGGAu -3'
miRNA:   3'- -GGCG--UGGCCGa----UGuuGCG------CUUCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 8732 0.67 0.52683
Target:  5'- aCCGCGuccUCGGUgGCGGCGCcGAAGUGGc -3'
miRNA:   3'- -GGCGU---GGCCGaUGUUGCG-CUUCGUCu -5'
12002 3' -54.9 NC_003278.1 + 12871 0.68 0.515956
Target:  5'- gCGguUCGGaCUcCAGgGCGAGGCGGGc -3'
miRNA:   3'- gGCguGGCC-GAuGUUgCGCUUCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 2215 0.68 0.514873
Target:  5'- cCCGCACCGccuGCUcagccggGCGACGUucGAGCAGu -3'
miRNA:   3'- -GGCGUGGC---CGA-------UGUUGCGc-UUCGUCu -5'
12002 3' -54.9 NC_003278.1 + 19389 0.68 0.494488
Target:  5'- aCCGCGCUGGCcgcGCAACaggcacggGUGAaagcacuggcucAGCAGAu -3'
miRNA:   3'- -GGCGUGGCCGa--UGUUG--------CGCU------------UCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 22124 0.68 0.494488
Target:  5'- gCCaGCuCCGGCaGCAgcACGCcGGGCAGGg -3'
miRNA:   3'- -GG-CGuGGCCGaUGU--UGCGcUUCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 22078 0.68 0.483907
Target:  5'- gCCGgaGCUGGCcgGCAGCGCGuuGAGCcuGGAc -3'
miRNA:   3'- -GGCg-UGGCCGa-UGUUGCGC--UUCG--UCU- -5'
12002 3' -54.9 NC_003278.1 + 8115 0.68 0.483907
Target:  5'- uUCGUGCCGGUgGCcagccaGGCGCcGAGCAGGg -3'
miRNA:   3'- -GGCGUGGCCGaUG------UUGCGcUUCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 23191 0.68 0.483907
Target:  5'- cCCGCGCCGaGUggaaccgccUACAGCGUGGcAGCGc- -3'
miRNA:   3'- -GGCGUGGC-CG---------AUGUUGCGCU-UCGUcu -5'
12002 3' -54.9 NC_003278.1 + 22390 0.68 0.483907
Target:  5'- gCCGUcgACCaGUUGCAGCGCGAcGCcGGc -3'
miRNA:   3'- -GGCG--UGGcCGAUGUUGCGCUuCGuCU- -5'
12002 3' -54.9 NC_003278.1 + 2154 0.68 0.483907
Target:  5'- gUCGC-CCGGCUgaGCAG-GCGguGCGGGa -3'
miRNA:   3'- -GGCGuGGCCGA--UGUUgCGCuuCGUCU- -5'
12002 3' -54.9 NC_003278.1 + 29827 0.68 0.473437
Target:  5'- gCCGCGCCGGCgGCGcCGCcAAGUc-- -3'
miRNA:   3'- -GGCGUGGCCGaUGUuGCGcUUCGucu -5'
12002 3' -54.9 NC_003278.1 + 7024 0.69 0.463081
Target:  5'- cCCGaGCCGGCgg-GGCGCGggGUAc- -3'
miRNA:   3'- -GGCgUGGCCGaugUUGCGCuuCGUcu -5'
12002 3' -54.9 NC_003278.1 + 6613 0.69 0.463081
Target:  5'- aCCGCuucgcgcguaccGCCGGCUGCGucauCGcCGAAG-AGAu -3'
miRNA:   3'- -GGCG------------UGGCCGAUGUu---GC-GCUUCgUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.