miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12003 3' -53 NC_003278.1 + 11802 0.66 0.693764
Target:  5'- cGCCUCGGcaccaUCGCCgcgguggaccaUGCcGCGCAgcGCGUCc -3'
miRNA:   3'- -UGGAGUC-----AGUGG-----------ACGaCGUGU--UGUAG- -5'
12003 3' -53 NC_003278.1 + 22175 0.66 0.693764
Target:  5'- gACCcggugUCAGcCAUCUGCcGCAguACGUCc -3'
miRNA:   3'- -UGG-----AGUCaGUGGACGaCGUguUGUAG- -5'
12003 3' -53 NC_003278.1 + 26108 0.66 0.693764
Target:  5'- gGCUUCAGUUcuaGCUgugGCUGCugAGCuuggaGUCg -3'
miRNA:   3'- -UGGAGUCAG---UGGa--CGACGugUUG-----UAG- -5'
12003 3' -53 NC_003278.1 + 28512 0.66 0.682154
Target:  5'- cGCCa---UCGCgCUGCUGCACcacGGCAUCg -3'
miRNA:   3'- -UGGagucAGUG-GACGACGUG---UUGUAG- -5'
12003 3' -53 NC_003278.1 + 19507 0.66 0.67049
Target:  5'- uCCUCAagcagcagCACCUGCaGCACAGCc-- -3'
miRNA:   3'- uGGAGUca------GUGGACGaCGUGUUGuag -5'
12003 3' -53 NC_003278.1 + 9852 0.66 0.658785
Target:  5'- cCUUCGGUgcCGCUgacuccagGCUGCAgGGCGUCa -3'
miRNA:   3'- uGGAGUCA--GUGGa-------CGACGUgUUGUAG- -5'
12003 3' -53 NC_003278.1 + 32169 0.66 0.647051
Target:  5'- gGCC-CAGUCGcggaagcgcuuCCUGCUggugGCGCGGCAcgUCg -3'
miRNA:   3'- -UGGaGUCAGU-----------GGACGA----CGUGUUGU--AG- -5'
12003 3' -53 NC_003278.1 + 8782 0.66 0.647051
Target:  5'- -gCUCg--CACCUGCUGCAgAACGc- -3'
miRNA:   3'- ugGAGucaGUGGACGACGUgUUGUag -5'
12003 3' -53 NC_003278.1 + 32043 0.67 0.58839
Target:  5'- cGCCcaUCAGcCAgaUGCaGCGCAGCGUCa -3'
miRNA:   3'- -UGG--AGUCaGUggACGaCGUGUUGUAG- -5'
12003 3' -53 NC_003278.1 + 1467 0.68 0.542139
Target:  5'- cAUCUCAuuaACCUGCUGCAgGcGCGUCu -3'
miRNA:   3'- -UGGAGUcagUGGACGACGUgU-UGUAG- -5'
12003 3' -53 NC_003278.1 + 7840 0.69 0.508254
Target:  5'- cGCCUCGGUCACgCcgGCgGUGCGACcgUa -3'
miRNA:   3'- -UGGAGUCAGUG-Ga-CGaCGUGUUGuaG- -5'
12003 3' -53 NC_003278.1 + 30892 0.69 0.486167
Target:  5'- cGCUUCGaccUCACCgaGCUGCGCGGCcUCg -3'
miRNA:   3'- -UGGAGUc--AGUGGa-CGACGUGUUGuAG- -5'
12003 3' -53 NC_003278.1 + 3250 0.78 0.137861
Target:  5'- uCCUCgcacAGUCGCCcuUGCUGCAgGGCGUCa -3'
miRNA:   3'- uGGAG----UCAGUGG--ACGACGUgUUGUAG- -5'
12003 3' -53 NC_003278.1 + 25388 0.78 0.127607
Target:  5'- aACCUCAGUCACCUGgucaacacucgaggcCUGCAacGCGUCc -3'
miRNA:   3'- -UGGAGUCAGUGGAC---------------GACGUguUGUAG- -5'
12003 3' -53 NC_003278.1 + 20717 1.1 0.00059
Target:  5'- gACCUCAGUCACCUGCUGCACAACAUCg -3'
miRNA:   3'- -UGGAGUCAGUGGACGACGUGUUGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.