Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12003 | 5' | -55.8 | NC_003278.1 | + | 1590 | 0.71 | 0.250147 |
Target: 5'- ---cGGauaGACCCGCAGGcCGGCGAGc -3' miRNA: 3'- acuuCCgg-UUGGGCGUCCaGUCGUUC- -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 1646 | 0.68 | 0.425321 |
Target: 5'- ----cGCCGGCCUGCGGGUCuauccGCAGc -3' miRNA: 3'- acuucCGGUUGGGCGUCCAGu----CGUUc -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 1871 | 0.67 | 0.476574 |
Target: 5'- ---uGGCCGACUCGU---UCAGCAGGg -3' miRNA: 3'- acuuCCGGUUGGGCGuccAGUCGUUC- -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 2939 | 0.68 | 0.386769 |
Target: 5'- gGAGGcGCCAccaccaccagACCCGCGGuGUCgcccgucucGGCGGGg -3' miRNA: 3'- aCUUC-CGGU----------UGGGCGUC-CAG---------UCGUUC- -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 3012 | 0.68 | 0.405757 |
Target: 5'- aGAcGGgCGACaCCGCGGGUCuGguGGu -3' miRNA: 3'- aCUuCCgGUUG-GGCGUCCAGuCguUC- -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 6476 | 0.66 | 0.530708 |
Target: 5'- ---cGG-CGugCUGCAGGcCGGCAAGg -3' miRNA: 3'- acuuCCgGUugGGCGUCCaGUCGUUC- -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 6824 | 0.71 | 0.278268 |
Target: 5'- ---cGGCCAACCCggGCAGGU--GCAAGc -3' miRNA: 3'- acuuCCGGUUGGG--CGUCCAguCGUUC- -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 6986 | 0.67 | 0.476574 |
Target: 5'- -uGGGGCCGAUCUGCcAGGUCcucuccuuccugAGCAGu -3' miRNA: 3'- acUUCCGGUUGGGCG-UCCAG------------UCGUUc -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 7886 | 0.67 | 0.487192 |
Target: 5'- gGAGGGUgGGgCCGU-GGUCGGCcAGg -3' miRNA: 3'- aCUUCCGgUUgGGCGuCCAGUCGuUC- -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 8198 | 0.74 | 0.168355 |
Target: 5'- cGAGGGCgaCAucugcgaacagguaGCCgaCGCAGGUCGGCAGGa -3' miRNA: 3'- aCUUCCG--GU--------------UGG--GCGUCCAGUCGUUC- -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 10155 | 0.66 | 0.497921 |
Target: 5'- ---uGGCCAACCUcaccaagguGCAGGaCGGCAu- -3' miRNA: 3'- acuuCCGGUUGGG---------CGUCCaGUCGUuc -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 11921 | 0.68 | 0.405757 |
Target: 5'- -cAAGG-CAGCCaGCcGGUCAGCAGGu -3' miRNA: 3'- acUUCCgGUUGGgCGuCCAGUCGUUC- -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 12538 | 0.69 | 0.350592 |
Target: 5'- gUGgcGGCauaGACCUGCAGG-CGGguGGu -3' miRNA: 3'- -ACuuCCGg--UUGGGCGUCCaGUCguUC- -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 13072 | 0.67 | 0.476574 |
Target: 5'- gGAAGGCCucAGCaCCGCGGGaCcGCGu- -3' miRNA: 3'- aCUUCCGG--UUG-GGCGUCCaGuCGUuc -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 14093 | 0.66 | 0.516396 |
Target: 5'- gGcGGGCCAggauguccggcgugAUgCGCAGGUCcaGGCGGGu -3' miRNA: 3'- aCuUCCGGU--------------UGgGCGUCCAG--UCGUUC- -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 18280 | 0.75 | 0.143022 |
Target: 5'- aUGGAGGCCu-UCCGCGGGggCGGCAu- -3' miRNA: 3'- -ACUUCCGGuuGGGCGUCCa-GUCGUuc -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 18327 | 0.77 | 0.11005 |
Target: 5'- gGAAGGCCuccauCuuGCGGGcCAGCGGGg -3' miRNA: 3'- aCUUCCGGuu---GggCGUCCaGUCGUUC- -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 18840 | 0.73 | 0.192194 |
Target: 5'- aGggGGaCGACguugucgggagcguuCUGCAGGUCAGCGGGa -3' miRNA: 3'- aCuuCCgGUUG---------------GGCGUCCAGUCGUUC- -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 20578 | 0.68 | 0.425321 |
Target: 5'- cGAGGGCgAGgCCGCgaGGGUCGccGCGAc -3' miRNA: 3'- aCUUCCGgUUgGGCG--UCCAGU--CGUUc -5' |
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12003 | 5' | -55.8 | NC_003278.1 | + | 20753 | 1.09 | 0.000389 |
Target: 5'- cUGAAGGCCAACCCGCAGGUCAGCAAGg -3' miRNA: 3'- -ACUUCCGGUUGGGCGUCCAGUCGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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