miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12004 3' -57.9 NC_003278.1 + 6370 0.66 0.453719
Target:  5'- --cUGGUgCggGGCAGUgGCCGCCGcCu -3'
miRNA:   3'- gccACCAgGa-CCGUUAaCGGCGGCaG- -5'
12004 3' -57.9 NC_003278.1 + 1784 0.66 0.453719
Target:  5'- aGG-GG-CCUGGCAAUUuCCGCaaccuguuCGUCu -3'
miRNA:   3'- gCCaCCaGGACCGUUAAcGGCG--------GCAG- -5'
12004 3' -57.9 NC_003278.1 + 7478 0.66 0.43384
Target:  5'- uGGUGGuugcgaugUCCUgGGCcuugucGUUGCCGCUGg- -3'
miRNA:   3'- gCCACC--------AGGA-CCGu-----UAACGGCGGCag -5'
12004 3' -57.9 NC_003278.1 + 30928 0.67 0.404996
Target:  5'- gCGGUGGgCUUGGCcGUUGUacagGCCGa- -3'
miRNA:   3'- -GCCACCaGGACCGuUAACGg---CGGCag -5'
12004 3' -57.9 NC_003278.1 + 5512 0.67 0.404996
Target:  5'- uGGUaucGGUacggCUGGCGAUggUGCCGCUGa- -3'
miRNA:   3'- gCCA---CCAg---GACCGUUA--ACGGCGGCag -5'
12004 3' -57.9 NC_003278.1 + 30243 0.67 0.395653
Target:  5'- uGGcccUGGUcgacgcgcugcgCCUGGUggU-GCCGCUGUCc -3'
miRNA:   3'- gCC---ACCA------------GGACCGuuAaCGGCGGCAG- -5'
12004 3' -57.9 NC_003278.1 + 28240 0.67 0.395653
Target:  5'- uCGGUGG-CC-GGCGAUcgcuUGCUccaGUCGUCg -3'
miRNA:   3'- -GCCACCaGGaCCGUUA----ACGG---CGGCAG- -5'
12004 3' -57.9 NC_003278.1 + 9089 0.67 0.359704
Target:  5'- aGGcgcUGGUgCUcGGCGG-UGCCGCCGg- -3'
miRNA:   3'- gCC---ACCAgGA-CCGUUaACGGCGGCag -5'
12004 3' -57.9 NC_003278.1 + 9673 0.68 0.326099
Target:  5'- gCGGaUGGccagcgCCUGGCGcagcugcUGCCGCUGUUg -3'
miRNA:   3'- -GCC-ACCa-----GGACCGUua-----ACGGCGGCAG- -5'
12004 3' -57.9 NC_003278.1 + 8109 0.68 0.326099
Target:  5'- cCGGUGGccagccaggcgCCgagcagGGCAccgaacagcaUGCCGCCGUCa -3'
miRNA:   3'- -GCCACCa----------GGa-----CCGUua--------ACGGCGGCAG- -5'
12004 3' -57.9 NC_003278.1 + 12091 0.69 0.294881
Target:  5'- aGGUGGUgCgaugcagGGCGucgcgGUCGCCGUUg -3'
miRNA:   3'- gCCACCAgGa------CCGUuaa--CGGCGGCAG- -5'
12004 3' -57.9 NC_003278.1 + 21037 1.1 0.00024
Target:  5'- cCGGUGGUCCUGGCAAUUGCCGCCGUCg -3'
miRNA:   3'- -GCCACCAGGACCGUUAACGGCGGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.