miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12004 5' -59.2 NC_003278.1 + 22821 0.66 0.379074
Target:  5'- cGcGCCGGCGCUGgCGgGCCUgccGAUCc-- -3'
miRNA:   3'- aC-CGGCCGCGGC-GCaUGGA---CUAGaua -5'
12004 5' -59.2 NC_003278.1 + 26777 0.66 0.370138
Target:  5'- gUGGCUGGUGCCG-GUuuCCUGcUCg-- -3'
miRNA:   3'- -ACCGGCCGCGGCgCAu-GGACuAGaua -5'
12004 5' -59.2 NC_003278.1 + 21788 0.66 0.370138
Target:  5'- aGGCCGGCGCgggcaGCGacaccgcagACCUGAa---- -3'
miRNA:   3'- aCCGGCCGCGg----CGCa--------UGGACUagaua -5'
12004 5' -59.2 NC_003278.1 + 21485 0.66 0.361346
Target:  5'- aGGCCGGC-CCGCuggGCgUGAUUg-- -3'
miRNA:   3'- aCCGGCCGcGGCGca-UGgACUAGaua -5'
12004 5' -59.2 NC_003278.1 + 22085 0.66 0.361346
Target:  5'- cUGGCCGGCaG-CGCGUugaGCCUGGa---- -3'
miRNA:   3'- -ACCGGCCG-CgGCGCA---UGGACUagaua -5'
12004 5' -59.2 NC_003278.1 + 22920 0.67 0.327652
Target:  5'- aGGuuGGCGUCGgacuCGUugGCCUGGUCc-- -3'
miRNA:   3'- aCCggCCGCGGC----GCA--UGGACUAGaua -5'
12004 5' -59.2 NC_003278.1 + 34473 0.67 0.327652
Target:  5'- cUGGuCCGGuUGUCGCGgucuaucACCUcGAUCUGUa -3'
miRNA:   3'- -ACC-GGCC-GCGGCGCa------UGGA-CUAGAUA- -5'
12004 5' -59.2 NC_003278.1 + 29656 0.67 0.327652
Target:  5'- aGGCCGGUGCCGgCaaauccACgCUGAUCa-- -3'
miRNA:   3'- aCCGGCCGCGGC-Gca----UG-GACUAGaua -5'
12004 5' -59.2 NC_003278.1 + 2091 0.67 0.288885
Target:  5'- cUGGCCaaguacauGCGCCGCGgcACC-GAUCUGg -3'
miRNA:   3'- -ACCGGc-------CGCGGCGCa-UGGaCUAGAUa -5'
12004 5' -59.2 NC_003278.1 + 29261 0.68 0.281578
Target:  5'- -cGCUGGcCGCCGCG-ACCUGGgcaCUGg -3'
miRNA:   3'- acCGGCC-GCGGCGCaUGGACUa--GAUa -5'
12004 5' -59.2 NC_003278.1 + 30825 0.69 0.234498
Target:  5'- aGGCCGGCuaCCuCGUucuccugcuGCCUGGUCUGg -3'
miRNA:   3'- aCCGGCCGc-GGcGCA---------UGGACUAGAUa -5'
12004 5' -59.2 NC_003278.1 + 8341 0.69 0.222317
Target:  5'- cUGGCCuacaucGCuGCCGCGcugcGCCUGGUCUGc -3'
miRNA:   3'- -ACCGGc-----CG-CGGCGCa---UGGACUAGAUa -5'
12004 5' -59.2 NC_003278.1 + 22455 0.7 0.183865
Target:  5'- -aGCCGGCGUCGCGcUGCaaCUGGUCg-- -3'
miRNA:   3'- acCGGCCGCGGCGC-AUG--GACUAGaua -5'
12004 5' -59.2 NC_003278.1 + 14915 0.72 0.143138
Target:  5'- aGGCCGGUaguagcccgGCCGCGUucaGCCUGAgcagCUu- -3'
miRNA:   3'- aCCGGCCG---------CGGCGCA---UGGACUa---GAua -5'
12004 5' -59.2 NC_003278.1 + 21521 0.72 0.131505
Target:  5'- cUGGCCGGCGCCGaGgcCCUGggCc-- -3'
miRNA:   3'- -ACCGGCCGCGGCgCauGGACuaGaua -5'
12004 5' -59.2 NC_003278.1 + 21073 1.05 0.000408
Target:  5'- cUGGCCGGCGCCGCGUACCUGAUCUAUc -3'
miRNA:   3'- -ACCGGCCGCGGCGCAUGGACUAGAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.