miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12005 5' -55.6 NC_003278.1 + 4553 0.66 0.614862
Target:  5'- uCGGCGCCuaugGCGA-CGuGCUGGcgugCAAGg -3'
miRNA:   3'- cGCCGCGG----CGCUaGC-UGACCaa--GUUC- -5'
12005 5' -55.6 NC_003278.1 + 16945 0.66 0.603628
Target:  5'- -aGGCuGCCGCGcgcgCGGCgaaGGggCGAGg -3'
miRNA:   3'- cgCCG-CGGCGCua--GCUGa--CCaaGUUC- -5'
12005 5' -55.6 NC_003278.1 + 1613 0.66 0.603628
Target:  5'- gGUGGUGCCGCaGAaCG-CUGGUggguUCGGa -3'
miRNA:   3'- -CGCCGCGGCG-CUaGCuGACCA----AGUUc -5'
12005 5' -55.6 NC_003278.1 + 32026 0.66 0.55904
Target:  5'- cCGGUGCCGCuGAUCGuCU---UCGAGa -3'
miRNA:   3'- cGCCGCGGCG-CUAGCuGAccaAGUUC- -5'
12005 5' -55.6 NC_003278.1 + 25560 0.67 0.537079
Target:  5'- aCGGcCGCUGCGGUCGGacugaUGGUcUCGu- -3'
miRNA:   3'- cGCC-GCGGCGCUAGCUg----ACCA-AGUuc -5'
12005 5' -55.6 NC_003278.1 + 32639 0.67 0.504729
Target:  5'- aGCGGCGCaCGCcGUacuGCUGGUauugCAGGg -3'
miRNA:   3'- -CGCCGCG-GCGcUAgc-UGACCAa---GUUC- -5'
12005 5' -55.6 NC_003278.1 + 22582 0.68 0.483635
Target:  5'- cGCGGCGCCGUGcugcaccUCuGGCUGGgcUgGAGu -3'
miRNA:   3'- -CGCCGCGGCGCu------AG-CUGACCa-AgUUC- -5'
12005 5' -55.6 NC_003278.1 + 22453 0.68 0.473248
Target:  5'- cCGGCGUCGCGcugcaacugGUCGACggcgcUGGU-CAGGu -3'
miRNA:   3'- cGCCGCGGCGC---------UAGCUG-----ACCAaGUUC- -5'
12005 5' -55.6 NC_003278.1 + 6165 0.68 0.473248
Target:  5'- gGCGGCGaCCGcCGAUcugccaguagagCGACaGGUucuUCAGGg -3'
miRNA:   3'- -CGCCGC-GGC-GCUA------------GCUGaCCA---AGUUC- -5'
12005 5' -55.6 NC_003278.1 + 14941 0.69 0.403956
Target:  5'- aGCGGCGaugcaaCGUGGUCaGCUcGGUUCAu- -3'
miRNA:   3'- -CGCCGCg-----GCGCUAGcUGA-CCAAGUuc -5'
12005 5' -55.6 NC_003278.1 + 12076 0.69 0.403013
Target:  5'- -gGGCGUCGCGGUCGccguuggGCgGGaUCAGGu -3'
miRNA:   3'- cgCCGCGGCGCUAGC-------UGaCCaAGUUC- -5'
12005 5' -55.6 NC_003278.1 + 21413 0.69 0.394589
Target:  5'- cGCGGCGCCGCcGA-CGcGCUGGa----- -3'
miRNA:   3'- -CGCCGCGGCG-CUaGC-UGACCaaguuc -5'
12005 5' -55.6 NC_003278.1 + 29880 0.71 0.324896
Target:  5'- gGCGGCGCCGCcgGcgCGGCUGuugUCGc- -3'
miRNA:   3'- -CGCCGCGGCG--CuaGCUGACca-AGUuc -5'
12005 5' -55.6 NC_003278.1 + 21077 0.74 0.214004
Target:  5'- cCGGCGCCGCGuaccugaucuAUCGcaACUGGgacgccgUCAAGg -3'
miRNA:   3'- cGCCGCGGCGC----------UAGC--UGACCa------AGUUC- -5'
12005 5' -55.6 NC_003278.1 + 7882 0.76 0.153204
Target:  5'- gGUGGgGCCGUGGUCGGCcaggccgUGGUUCGc- -3'
miRNA:   3'- -CGCCgCGGCGCUAGCUG-------ACCAAGUuc -5'
12005 5' -55.6 NC_003278.1 + 29835 0.82 0.058963
Target:  5'- gGCGGCGCCGCcaaguccuUCGACUGGgaCGAGu -3'
miRNA:   3'- -CGCCGCGGCGcu------AGCUGACCaaGUUC- -5'
12005 5' -55.6 NC_003278.1 + 18866 0.83 0.047872
Target:  5'- -gGGCGCCGCgcuuGAUCGGCUGGU-CGAGg -3'
miRNA:   3'- cgCCGCGGCG----CUAGCUGACCAaGUUC- -5'
12005 5' -55.6 NC_003278.1 + 21367 1.11 0.000402
Target:  5'- gGCGGCGCCGCGAUCGACUGGUUCAAGg -3'
miRNA:   3'- -CGCCGCGGCGCUAGCUGACCAAGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.