miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12006 5' -59.5 NC_003278.1 + 21056 0.66 0.359704
Target:  5'- -cCGCcguCGuGGCGGUGCugGCCgGCGCc -3'
miRNA:   3'- uuGCGuu-GUuCCGCCGCG--CGGaCGCG- -5'
12006 5' -59.5 NC_003278.1 + 17240 0.66 0.359704
Target:  5'- uAGCGCGGuCAucGGCGGCgucaGCGCCgaugGCa- -3'
miRNA:   3'- -UUGCGUU-GUu-CCGCCG----CGCGGa---CGcg -5'
12006 5' -59.5 NC_003278.1 + 28433 0.66 0.359704
Target:  5'- cGCGCGGCGucuGGUGGUGCccacCCaGCGUc -3'
miRNA:   3'- uUGCGUUGUu--CCGCCGCGc---GGaCGCG- -5'
12006 5' -59.5 NC_003278.1 + 2430 0.66 0.359704
Target:  5'- -cCGCGcCAGGGUGGcCGUGCCgagGCc- -3'
miRNA:   3'- uuGCGUuGUUCCGCC-GCGCGGa--CGcg -5'
12006 5' -59.5 NC_003278.1 + 3668 0.66 0.357102
Target:  5'- aAGCGCAcaucuuCAAGGCGuauaccaggccuucGCGCGCgaUGCGg -3'
miRNA:   3'- -UUGCGUu-----GUUCCGC--------------CGCGCGg-ACGCg -5'
12006 5' -59.5 NC_003278.1 + 31931 0.66 0.351081
Target:  5'- gAACaCGGCAuccGGuCGGCGCccGCCggcgGCGCg -3'
miRNA:   3'- -UUGcGUUGUu--CC-GCCGCG--CGGa---CGCG- -5'
12006 5' -59.5 NC_003278.1 + 21402 0.66 0.342605
Target:  5'- cGACGC-GCu-GGaCGGCGCGCUUGaucuGCc -3'
miRNA:   3'- -UUGCGuUGuuCC-GCCGCGCGGACg---CG- -5'
12006 5' -59.5 NC_003278.1 + 26892 0.66 0.342605
Target:  5'- cGCGCcuGAUGGcGGUGGCGaCGCCccugGCGUa -3'
miRNA:   3'- uUGCG--UUGUU-CCGCCGC-GCGGa---CGCG- -5'
12006 5' -59.5 NC_003278.1 + 30496 0.66 0.342605
Target:  5'- -cCGCcAgAAGGUGGCcgacGCGgcaacCCUGCGCg -3'
miRNA:   3'- uuGCGuUgUUCCGCCG----CGC-----GGACGCG- -5'
12006 5' -59.5 NC_003278.1 + 19592 0.66 0.342605
Target:  5'- uGCGCAguugcuGCAGGGCguGGCuGUGCUgcagGUGCu -3'
miRNA:   3'- uUGCGU------UGUUCCG--CCG-CGCGGa---CGCG- -5'
12006 5' -59.5 NC_003278.1 + 2973 0.66 0.342605
Target:  5'- cGGCGguACcGGGCGGCaaguuccgcGUGCUggaGCGCc -3'
miRNA:   3'- -UUGCguUGuUCCGCCG---------CGCGGa--CGCG- -5'
12006 5' -59.5 NC_003278.1 + 30823 0.66 0.334278
Target:  5'- cAGCGCGACAgcggccAGaGCGGCGUGaucggucgguuCCUGCu- -3'
miRNA:   3'- -UUGCGUUGU------UC-CGCCGCGC-----------GGACGcg -5'
12006 5' -59.5 NC_003278.1 + 17992 0.66 0.326099
Target:  5'- cACGCu-CAAGGcCGGCaaGC-UGCGCa -3'
miRNA:   3'- uUGCGuuGUUCC-GCCGcgCGgACGCG- -5'
12006 5' -59.5 NC_003278.1 + 19325 0.66 0.326099
Target:  5'- cAACGCucAGCAGaGCGacguGCGCGCCUuccgcacccaGCGCg -3'
miRNA:   3'- -UUGCG--UUGUUcCGC----CGCGCGGA----------CGCG- -5'
12006 5' -59.5 NC_003278.1 + 12856 0.66 0.318071
Target:  5'- gGGCGaGGC-GGGCGGCGauuucCGCCUGCu- -3'
miRNA:   3'- -UUGCgUUGuUCCGCCGC-----GCGGACGcg -5'
12006 5' -59.5 NC_003278.1 + 16703 0.66 0.318071
Target:  5'- gGGCGUcggugucgucgAGCu-GGCGGuCGCGCCaaucGCGCu -3'
miRNA:   3'- -UUGCG-----------UUGuuCCGCC-GCGCGGa---CGCG- -5'
12006 5' -59.5 NC_003278.1 + 12144 0.66 0.318071
Target:  5'- uGCGC-GC-AGGUGGUGgGC-UGCGCu -3'
miRNA:   3'- uUGCGuUGuUCCGCCGCgCGgACGCG- -5'
12006 5' -59.5 NC_003278.1 + 27845 0.66 0.318071
Target:  5'- uACGCcGCAgGGGCuGCGCGgCaaGCGCa -3'
miRNA:   3'- uUGCGuUGU-UCCGcCGCGC-GgaCGCG- -5'
12006 5' -59.5 NC_003278.1 + 28680 0.67 0.310192
Target:  5'- --gGUGAcCGAGGCGcGCGC-CCUGgGCu -3'
miRNA:   3'- uugCGUU-GUUCCGC-CGCGcGGACgCG- -5'
12006 5' -59.5 NC_003278.1 + 2037 0.67 0.310192
Target:  5'- cGGCGCAuguACuuGGCcaGCgGCGCCUGCaGCg -3'
miRNA:   3'- -UUGCGU---UGuuCCGc-CG-CGCGGACG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.