miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12006 5' -59.5 NC_003278.1 + 17512 0.67 0.302462
Target:  5'- uGACGUggAGCAccGUGGUcaaccagaccGUGCCUGCGCc -3'
miRNA:   3'- -UUGCG--UUGUucCGCCG----------CGCGGACGCG- -5'
12006 5' -59.5 NC_003278.1 + 9089 0.67 0.302462
Target:  5'- aGGCGCugguGCucGGCGGUGCcGCCgGCa- -3'
miRNA:   3'- -UUGCGu---UGuuCCGCCGCG-CGGaCGcg -5'
12006 5' -59.5 NC_003278.1 + 6831 0.67 0.302462
Target:  5'- aGugGCAugGccGGCGGCGagguagaGCUUcGCGCg -3'
miRNA:   3'- -UugCGUugUu-CCGCCGCg------CGGA-CGCG- -5'
12006 5' -59.5 NC_003278.1 + 27940 0.67 0.294882
Target:  5'- aGAUGcCAGCAauguguGGGCGGUccucgaggauGCGCUUGcCGCg -3'
miRNA:   3'- -UUGC-GUUGU------UCCGCCG----------CGCGGAC-GCG- -5'
12006 5' -59.5 NC_003278.1 + 12885 0.67 0.28745
Target:  5'- cAGCGgguCAACGAGGCGGCucucgccaacauGCugGCCaGCGCc -3'
miRNA:   3'- -UUGC---GUUGUUCCGCCG------------CG--CGGaCGCG- -5'
12006 5' -59.5 NC_003278.1 + 29044 0.67 0.280166
Target:  5'- uGCGCGACAAGGCccugcaGCaaGCCggcgGCGUc -3'
miRNA:   3'- uUGCGUUGUUCCGc-----CGcgCGGa---CGCG- -5'
12006 5' -59.5 NC_003278.1 + 34474 0.67 0.275867
Target:  5'- -gUGCuAGCGGGGCGGCGUaCuccacgucggauacgCUGCGCa -3'
miRNA:   3'- uuGCG-UUGUUCCGCCGCGcG---------------GACGCG- -5'
12006 5' -59.5 NC_003278.1 + 8560 0.67 0.27303
Target:  5'- aGGCaCAGCAGGGUGGCGaCGaugGCGUg -3'
miRNA:   3'- -UUGcGUUGUUCCGCCGC-GCggaCGCG- -5'
12006 5' -59.5 NC_003278.1 + 22653 0.67 0.27303
Target:  5'- cGACGaaaccgAGCAcaGCGGCGCGCCggacGUGCu -3'
miRNA:   3'- -UUGCg-----UUGUucCGCCGCGCGGa---CGCG- -5'
12006 5' -59.5 NC_003278.1 + 8232 0.68 0.266041
Target:  5'- --aGCcuCAAGGCGGU-CGCCUGgGUc -3'
miRNA:   3'- uugCGuuGUUCCGCCGcGCGGACgCG- -5'
12006 5' -59.5 NC_003278.1 + 26562 0.68 0.266041
Target:  5'- aAACGCGGCGccAGGUGGUcaGCGCgaucaucgGCGCc -3'
miRNA:   3'- -UUGCGUUGU--UCCGCCG--CGCGga------CGCG- -5'
12006 5' -59.5 NC_003278.1 + 31565 0.68 0.259197
Target:  5'- aAACGCAGgGAgGGCGGCGgcaUGCUUaaGCGUa -3'
miRNA:   3'- -UUGCGUUgUU-CCGCCGC---GCGGA--CGCG- -5'
12006 5' -59.5 NC_003278.1 + 8608 0.68 0.252497
Target:  5'- gAugGCcucAGCAGGGCGGCGacguuGCC-GCGg -3'
miRNA:   3'- -UugCG---UUGUUCCGCCGCg----CGGaCGCg -5'
12006 5' -59.5 NC_003278.1 + 33160 0.68 0.251835
Target:  5'- cAGCGCGGCGaguuccaGGGUGGUaaacgGCCUGUGCc -3'
miRNA:   3'- -UUGCGUUGU-------UCCGCCGcg---CGGACGCG- -5'
12006 5' -59.5 NC_003278.1 + 8455 0.68 0.245941
Target:  5'- --aGCAACGAGacgcuGCGGCggaagcggGCGCCgcaGCGCu -3'
miRNA:   3'- uugCGUUGUUC-----CGCCG--------CGCGGa--CGCG- -5'
12006 5' -59.5 NC_003278.1 + 19432 0.68 0.245293
Target:  5'- cAGCGCGGugcugaccugcucCAGGGCGcCGCGCUggGUGCg -3'
miRNA:   3'- -UUGCGUU-------------GUUCCGCcGCGCGGa-CGCG- -5'
12006 5' -59.5 NC_003278.1 + 28745 0.68 0.239526
Target:  5'- aGACGUAGCccAGGGC-GCGCGCCU-CGg -3'
miRNA:   3'- -UUGCGUUG--UUCCGcCGCGCGGAcGCg -5'
12006 5' -59.5 NC_003278.1 + 19835 0.68 0.238892
Target:  5'- cGACGCAACGaugucggccacccAGGCGGUGacuCGCaucgaGCGCa -3'
miRNA:   3'- -UUGCGUUGU-------------UCCGCCGC---GCGga---CGCG- -5'
12006 5' -59.5 NC_003278.1 + 4322 0.68 0.233252
Target:  5'- gGGCGCGgagcuACAagGGGCGGCGCuaCUGagggGCg -3'
miRNA:   3'- -UUGCGU-----UGU--UCCGCCGCGcgGACg---CG- -5'
12006 5' -59.5 NC_003278.1 + 1 0.69 0.227116
Target:  5'- aGGCGUGGCGGGGgGacgacugcGCGCGCCgGCGa -3'
miRNA:   3'- -UUGCGUUGUUCCgC--------CGCGCGGaCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.