miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12007 3' -56 NC_003278.1 + 22190 1.09 0.0006
Target:  5'- aUCGAACGCGUCACCGAGACGCGGACAc -3'
miRNA:   3'- -AGCUUGCGCAGUGGCUCUGCGCCUGU- -5'
12007 3' -56 NC_003278.1 + 21751 0.71 0.288691
Target:  5'- gUCGAugGUGauggccugCGCCGGGGCGCuGGCGc -3'
miRNA:   3'- -AGCUugCGCa-------GUGGCUCUGCGcCUGU- -5'
12007 3' -56 NC_003278.1 + 21419 0.71 0.296116
Target:  5'- gUCGAuCGCGgcgcCGCCGAcGCGCuGGACGg -3'
miRNA:   3'- -AGCUuGCGCa---GUGGCUcUGCG-CCUGU- -5'
12007 3' -56 NC_003278.1 + 19616 0.71 0.31141
Target:  5'- cUGAGCcgGCGUUGCUGAGGCGCGuGCGc -3'
miRNA:   3'- aGCUUG--CGCAGUGGCUCUGCGCcUGU- -5'
12007 3' -56 NC_003278.1 + 20240 0.71 0.319279
Target:  5'- uUC-AGCGaGUCGCCGAGcAUGCGGAUg -3'
miRNA:   3'- -AGcUUGCgCAGUGGCUC-UGCGCCUGu -5'
12007 3' -56 NC_003278.1 + 16732 0.69 0.38753
Target:  5'- cUCGAGCuCGUCGCgGuGACGUGcGACc -3'
miRNA:   3'- -AGCUUGcGCAGUGgCuCUGCGC-CUGu -5'
12007 3' -56 NC_003278.1 + 23283 0.69 0.38753
Target:  5'- gCGAGCGCGUaGCUGAG-CGUGG-CGc -3'
miRNA:   3'- aGCUUGCGCAgUGGCUCuGCGCCuGU- -5'
12007 3' -56 NC_003278.1 + 8673 0.69 0.396711
Target:  5'- uUCG-GCGcCGcCACCGAgGACGCGGuGCGu -3'
miRNA:   3'- -AGCuUGC-GCaGUGGCU-CUGCGCC-UGU- -5'
12007 3' -56 NC_003278.1 + 26832 0.69 0.40603
Target:  5'- -gGGGCGuCGcCACCGccaucAGGCGCGGugAg -3'
miRNA:   3'- agCUUGC-GCaGUGGC-----UCUGCGCCugU- -5'
12007 3' -56 NC_003278.1 + 15780 0.69 0.415485
Target:  5'- aUCGGGCGCGUgugcgaaggCACCGcccAGAUcgcaGCGGACc -3'
miRNA:   3'- -AGCUUGCGCA---------GUGGC---UCUG----CGCCUGu -5'
12007 3' -56 NC_003278.1 + 32114 0.68 0.444641
Target:  5'- cCGGcCGCGgcUCGCC-AGACGCgGGACGu -3'
miRNA:   3'- aGCUuGCGC--AGUGGcUCUGCG-CCUGU- -5'
12007 3' -56 NC_003278.1 + 5571 0.68 0.474909
Target:  5'- cUCGuAACGCugGUUGUCGAG-CGCGGACAc -3'
miRNA:   3'- -AGC-UUGCG--CAGUGGCUCuGCGCCUGU- -5'
12007 3' -56 NC_003278.1 + 13189 0.68 0.48419
Target:  5'- cCGAG-GCaUCGCCGAcgcgaccgucggcGGCGCGGGCGu -3'
miRNA:   3'- aGCUUgCGcAGUGGCU-------------CUGCGCCUGU- -5'
12007 3' -56 NC_003278.1 + 12216 0.67 0.527496
Target:  5'- gUGugUGaUGUCGCCGAcGAUGCGGAUg -3'
miRNA:   3'- aGCuuGC-GCAGUGGCU-CUGCGCCUGu -5'
12007 3' -56 NC_003278.1 + 28674 0.67 0.538283
Target:  5'- gCGGugG-GUgACCGAGGCGCGcGCc -3'
miRNA:   3'- aGCUugCgCAgUGGCUCUGCGCcUGu -5'
12007 3' -56 NC_003278.1 + 26396 0.67 0.538283
Target:  5'- gUCGAgauAUGUGUUugCGGGcugccuCGCGGGCu -3'
miRNA:   3'- -AGCU---UGCGCAGugGCUCu-----GCGCCUGu -5'
12007 3' -56 NC_003278.1 + 22433 0.66 0.560074
Target:  5'- gUCGAcgGCGCugGUCAgguagcCCGucACGCGGGCGa -3'
miRNA:   3'- -AGCU--UGCG--CAGU------GGCucUGCGCCUGU- -5'
12007 3' -56 NC_003278.1 + 12469 0.66 0.560074
Target:  5'- cCGuauuCGCGUCGCau-GACGCGGGu- -3'
miRNA:   3'- aGCuu--GCGCAGUGgcuCUGCGCCUgu -5'
12007 3' -56 NC_003278.1 + 26864 0.66 0.560074
Target:  5'- gUCGAcCGCaucaUCGCCGAGGCGCuGcGCGa -3'
miRNA:   3'- -AGCUuGCGc---AGUGGCUCUGCGcC-UGU- -5'
12007 3' -56 NC_003278.1 + 13645 0.66 0.571062
Target:  5'- uUCGGugGCGUUGCgUGGGAgaaGCuGGGCAu -3'
miRNA:   3'- -AGCUugCGCAGUG-GCUCUg--CG-CCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.